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Table 1 Summary of generated Ruditapes philippinarum ESTs and assembly results with statistics describing different properties of transcriptome contig sequences available in Ruditapes philippinarum Database (compgen.bio.unipd.it/RuphiBase)

From: Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

  Feature Value
Sequences 454 reads 457,717
  Sanger sequences 5,707
  Assembled sequences 191,624
Contigs First run of hybrid assembly 40,477
  Meta-contigs of second assembly 4,990
  Not re-assembled 27,616
  Total (Ruditapes philippinarum transcriptome) 32,606
  Mean length (bp) 546
  Max length (bp) 2497
  Mean Average quality (Phred) 39.2
  Mean GC% 33.5