Table 1 Summary of generated Ruditapes philippinarum ESTs and assembly results with statistics describing different properties of transcriptome contig sequences available in Ruditapes philippinarum Database (compgen.bio.unipd.it/RuphiBase)
| Feature | Value | |
|---|---|---|
| Sequences | 454 reads | 457,717 |
| Sanger sequences | 5,707 | |
| Assembled sequences | 191,624 | |
| Contigs | First run of hybrid assembly | 40,477 |
| Meta-contigs of second assembly | 4,990 | |
| Not re-assembled | 27,616 | |
| Total (Ruditapes philippinarum transcriptome) | 32,606 | |
| Mean length (bp) | 546 | |
| Max length (bp) | 2497 | |
| Mean Average quality (Phred) | 39.2 | |
| Mean GC% | 33.5 |