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Table 4 Biological Process (BP), Cellular Component (CC), KEGG pathways (KP) and Molecular Function (MF) significantly represented by at least 10 genes up-regulated in gills compared to digestive gland

From: Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

  Term Count p-value F.E.
KP dre04510:Focal adhesion 20 1.05E-04 2.31
  dre04540:Gap junction 8 6.50E-03 2.93
  dre04310:Wnt signaling pathway 13 1.22E-02 2.02
  dre04210:Apoptosis 8 1.24E-02 2.69
  dre04114:Oocyte meiosis 9 1.48E-02 2.42
  dre04621:NOD-like receptor signaling pathway 7 3.09E-02 2.57
  dre04630:Jak-STAT signaling pathway 5 3.50E-02 3.36
  dre04622:RIG-I-like receptor signaling pathway 6 4.50E-02 2.69
  dre04620:Toll-like receptor signaling pathway 7 4.94E-02 2.35
BP GO:0050794~regulation of cellular process 89 2.74E-04 1.35
  GO:0034622~cellular macromolecular complex assembly 16 3.69E-04 2.41
  GO:0065007~biological regulation 101 3.75E-04 1.31
  GO:0050789~regulation of biological process 91 8.68E-04 1.31
  GO:0007166~cell surface receptor linked signal transduction 22 1.16E-03 1.93
  GO:0034621~cellular macromolecular complex subunit organization 16 1.87E-03 2.15
  GO:0007017~microtubule-based process 11 2.48E-03 2.59
  GO:0022607~cellular component assembly 20 4.27E-03 1.84
  GO:0050896~response to stimulus 39 5.63E-03 1.47
  GO:0042981~regulation of apoptosis 10 6.07E-03 2.51
  GO:0065003~macromolecular complex assembly 16 6.68E-03 1.94
  GO:0032501~multicellular organismal process 60 7.63E-03 1.32
  GO:0009653~anatomical structure morphogenesis 28 9.94E-03 1.55
  GO:0042592~homeostatic process 17 1.01E-02 1.83
  GO:0001568~blood vessel development 10 1.07E-02 2.35
  GO:0043067~regulation of programmed cell death 10 1.07E-02 2.35
  GO:0010941~regulation of cell death 10 1.07E-02 2.35
  GO:0001944~vasculature development 10 1.07E-02 2.35
  GO:0044085~cellular component biogenesis 23 1.39E-02 1.60
CC GO:0015630~microtubule cytoskeleton 11 0.005 2.423
  GO:0044430~cytoskeletal part 14 0.033 1.747
  GO:0005856~cytoskeleton 22 0.044 1.471
MF GO:0003924~GTPase activity 11 5.20E-04 2.97
  GO:0005515~protein binding 85 3.75E-03 1.28
  GO:0003700~transcription factor activity 12 5.89E-03 2.26
  GO:0019001~guanyl nucleotide binding 22 6.17E-03 1.73
  GO:0005525~GTP binding 22 6.17E-03 1.73
  GO:0032561~guanyl ribonucleotide binding 22 6.17E-03 1.73
  1. Gene count, p-value and fold enrichment (F.E.) corresponding to each term are indicated.