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Table 7 GO terms significantly over-represented, among genes differentially expressed, between Alberoni and Marghera samples, in both gills and digestive gland

From: Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

DAVID analysis of digestive gland differential expressed genes

Category

Term

Count

p-value

F.E.

BP

GO:0007018~microtubule-based movement

4

0.014259

6.969072

 

GO:0007017~microtubule-based process

5

0.021639

4.35567

 

GO:0010033~response to organic substance

4

0.040861

4.878351

 

GO:0046686~response to cadmium ion

3

0.078833

6.097938

 

GO:0051597~response to methylmercury

3

0.078833

6.097938

MF

GO:0005856~cytoskeleton

11

0.008012

2.50387

 

GO:0015630~microtubule cytoskeleton

5

0.028246

4.021368

 

GO:0005874~microtubule

4

0.030885

5.361823

 

GO:0045259~proton-transporting ATP synthase complex

4

0.09956

3.446886

KP

dre04510:Focal adhesion

8

0.035313

2.421429

 

dre00982:Drug metabolism

4

0.042809

4.708333

 

dre00980:Metabolism of xenobiotics by cytochrome P450

4

0.042809

4.708333

DAVID analysis of gills differential expressed genes

Category

Term

Count

p-value

F.E.

BP

GO:0044267~cellular protein metabolic process

75

0.002721

1.314444

 

GO:0006412~translation

43

0.004311

1.463856

 

GO:0045333~cellular respiration

10

0.008891

2.490526

 

GO:0015980~energy derivation by oxidation of organic comp.

10

0.008891

2.490526

 

GO:0034645~cellular macromolecule biosynthetic process

54

0.01233

1.323979

 

GO:0019538~protein metabolic process

90

0.012991

1.209886

 

GO:0006091~generation of precursor metabolites and energy

18

0.037073

1.607094

 

GO:0006457~protein folding

13

0.046318

1.7576

 

GO:0010467~gene expression

56

0.063065

1.210009

 

GO:0044237~cellular metabolic process

125

0.063116

1.103545

 

GO:0009060~aerobic respiration

5

0.065749

2.9575

MF

GO:0003735~structural constituent of ribosome

38

4.49E-04

1.689704

 

GO:0005198~structural molecule activity

43

7.11E-04

1.593361

 

GO:0015078~hydrogen ion transmembrane transporter activity

14

0.035716

1.766618

 

GO:0016859~cis-trans isomerase activity

7

0.057275

2.334459

 

GO:0003755~peptidyl-prolyl cis-trans isomerase activity

7

0.057275

2.334459

 

GO:0008092~cytoskeletal protein binding

12

0.07344

1.697789

 

GO:0015075~ion transmembrane transporter activity

23

0.07676

1.394612

 

GO:0003924~GTPase activity

6

0.09088

2.334459

KP

dre03010:Ribosome

39

9.90E-07

2.003182

 

dre04260:Cardiac muscle contraction

13

0.007105

2.136727

 

dre00630:Glyoxylate and dicarboxylate metabolism

4

0.094374

3.287273

  1. Details about "Biological process", "Molecular function" and "KEGG pathways" represented by at least 2 genes up regulated in each tissue.