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Table 7 GO terms significantly over-represented, among genes differentially expressed, between Alberoni and Marghera samples, in both gills and digestive gland

From: Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

DAVID analysis of digestive gland differential expressed genes
Category Term Count p-value F.E.
BP GO:0007018~microtubule-based movement 4 0.014259 6.969072
  GO:0007017~microtubule-based process 5 0.021639 4.35567
  GO:0010033~response to organic substance 4 0.040861 4.878351
  GO:0046686~response to cadmium ion 3 0.078833 6.097938
  GO:0051597~response to methylmercury 3 0.078833 6.097938
MF GO:0005856~cytoskeleton 11 0.008012 2.50387
  GO:0015630~microtubule cytoskeleton 5 0.028246 4.021368
  GO:0005874~microtubule 4 0.030885 5.361823
  GO:0045259~proton-transporting ATP synthase complex 4 0.09956 3.446886
KP dre04510:Focal adhesion 8 0.035313 2.421429
  dre00982:Drug metabolism 4 0.042809 4.708333
  dre00980:Metabolism of xenobiotics by cytochrome P450 4 0.042809 4.708333
DAVID analysis of gills differential expressed genes
Category Term Count p-value F.E.
BP GO:0044267~cellular protein metabolic process 75 0.002721 1.314444
  GO:0006412~translation 43 0.004311 1.463856
  GO:0045333~cellular respiration 10 0.008891 2.490526
  GO:0015980~energy derivation by oxidation of organic comp. 10 0.008891 2.490526
  GO:0034645~cellular macromolecule biosynthetic process 54 0.01233 1.323979
  GO:0019538~protein metabolic process 90 0.012991 1.209886
  GO:0006091~generation of precursor metabolites and energy 18 0.037073 1.607094
  GO:0006457~protein folding 13 0.046318 1.7576
  GO:0010467~gene expression 56 0.063065 1.210009
  GO:0044237~cellular metabolic process 125 0.063116 1.103545
  GO:0009060~aerobic respiration 5 0.065749 2.9575
MF GO:0003735~structural constituent of ribosome 38 4.49E-04 1.689704
  GO:0005198~structural molecule activity 43 7.11E-04 1.593361
  GO:0015078~hydrogen ion transmembrane transporter activity 14 0.035716 1.766618
  GO:0016859~cis-trans isomerase activity 7 0.057275 2.334459
  GO:0003755~peptidyl-prolyl cis-trans isomerase activity 7 0.057275 2.334459
  GO:0008092~cytoskeletal protein binding 12 0.07344 1.697789
  GO:0015075~ion transmembrane transporter activity 23 0.07676 1.394612
  GO:0003924~GTPase activity 6 0.09088 2.334459
KP dre03010:Ribosome 39 9.90E-07 2.003182
  dre04260:Cardiac muscle contraction 13 0.007105 2.136727
  dre00630:Glyoxylate and dicarboxylate metabolism 4 0.094374 3.287273
  1. Details about "Biological process", "Molecular function" and "KEGG pathways" represented by at least 2 genes up regulated in each tissue.