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Table 2 The four different motifs matching the palindromic AtoC binding site

From: Escherichia coli genome-wide promoter analysis: Identification of additional AtoC binding target elements

Motif No.

Log-likelihood score

Consensus

Logo

Motif 1

117.6

GCkATrCrrnnATTTrCwCA

Motif 2

51.8

GnGnAAnTTyCTGCAwAGCC

Motif 3

168.6

wnnnwrsAwAwmrnknmAnr

Motif 4

66.3

nCknATnmGrnnnTnACGCm

  1. Motifs 1-3 are the top scoring motifs derived of each of the three aforementioned executions. Motif 4 is an intermediary motif of unexpectedly high conservation among different intergenic regions.
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BMC Genomics

ISSN: 1471-2164

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