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Table 4 Results of the Gene Ontology Term Analysis

From: Escherichia coli genome-wide promoter analysis: Identification of additional AtoC binding target elements

GO id

Term

Corrected p-value

FDR (%)

Enrichment in hits

Percentage in hits

Enrichment in genome

Percentage in genome

Motif 1

GO:0016638

oxidoreductase activity, acting on the CH-NH2 group of donors

0.066

12.00

3/67

4.47

10/4339

0.23

Motif 2

GO:0015749

monosaccharide transport

0.045

10.00

4/154

2.59

891101

0.23

GO:0022891

substrate-specific transmembrane transporter activity

0.006

0.00

22/154

14.28

254/4339

5.85

GO:0043169

cation binding

0.012

0.00

37/154

24.02

570/4339

13.13

GO:0008324

cation transmembrane transporter activity

0.076

2.33

13/154

8.44

128/4339

2.94

Motif 3

GO:0045449

regulation of transcription

0.001

0.00

53/324

16.35

372/4339

8.57

GO:0007155

cell adhesion

0.027

0.00

10/324

3.08

34/4339

0.78

GO:0001101

response to acid

0.042

0.12

4/324

1.23

5/4339

0.11

GO:0009289

fimbrium

0.032

0.00

8/324

2.46

28/4339

0.64

GO:0003700

transcription factor activity

0.01

0.00

32/324

9.87

208/4339

4.79

Motif 4

GO:0051234

establishment of localization

7.82E-04

0.00

40/110

36

800/4339

18

GO:0005215

transporter activity

3.91E-03

0.00

30/110

27

561/4339

13

  1. Results of the GOT analysis of motifs 1, 2, 3 and 4, at prior probability set to 0.7 (corrected p-value cut-off set to 0.1).