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Table 4 Results of the Gene Ontology Term Analysis

From: Escherichia coli genome-wide promoter analysis: Identification of additional AtoC binding target elements

GO id Term Corrected p-value FDR (%) Enrichment in hits Percentage in hits Enrichment in genome Percentage in genome
Motif 1
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 0.066 12.00 3/67 4.47 10/4339 0.23
Motif 2
GO:0015749 monosaccharide transport 0.045 10.00 4/154 2.59 891101 0.23
GO:0022891 substrate-specific transmembrane transporter activity 0.006 0.00 22/154 14.28 254/4339 5.85
GO:0043169 cation binding 0.012 0.00 37/154 24.02 570/4339 13.13
GO:0008324 cation transmembrane transporter activity 0.076 2.33 13/154 8.44 128/4339 2.94
Motif 3
GO:0045449 regulation of transcription 0.001 0.00 53/324 16.35 372/4339 8.57
GO:0007155 cell adhesion 0.027 0.00 10/324 3.08 34/4339 0.78
GO:0001101 response to acid 0.042 0.12 4/324 1.23 5/4339 0.11
GO:0009289 fimbrium 0.032 0.00 8/324 2.46 28/4339 0.64
GO:0003700 transcription factor activity 0.01 0.00 32/324 9.87 208/4339 4.79
Motif 4
GO:0051234 establishment of localization 7.82E-04 0.00 40/110 36 800/4339 18
GO:0005215 transporter activity 3.91E-03 0.00 30/110 27 561/4339 13
  1. Results of the GOT analysis of motifs 1, 2, 3 and 4, at prior probability set to 0.7 (corrected p-value cut-off set to 0.1).