Skip to main content

Advertisement

Table 2 Summary of sequence-based markers used to anchor and orient the scaffolds to linkage groups of B. rapa

From: A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly

Linkage
group
Markers (no.) InDels (no.) SSRs (no.) Anchored
InDels (no.)
Anchored
SSRs (no.)
Anchored
Scaff. no.
Anchored
Scaff.lg (bp)a
Anchored Scaff.cv (%)b
A01 41 34 7 34 5 21 20867750 7.35
A02 42 32 10 32 8 18 27594208 9.72
A03 72 61 11 61 9 9 31313061 11.03
A04 30 25 5 25 2 14 16383005 5.77
A05 59 46 13 46 8 17 21627037 7.62
A06 57 46 11 46 8 14 25300054 8.91
A07 54 42 12 42 9 10 21622174 7.62
A08 29 25 4 25 3 11 16765946 5.91
A09 81 65 16 65 11 32 36142156 12.73
A10 42 39 3 39 3 6 17594535 6.20
Total 507 415 92 415 66 152 235209926 82.86
  1. a anchored scaffold length; b anchored scaffold coverage.