Table 2 Summary of sequence-based markers used to anchor and orient the scaffolds to linkage groups of B. rapa
From: A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly
Linkage group | Markers (no.) | InDels (no.) | SSRs (no.) | Anchored InDels (no.) | Anchored SSRs (no.) | Anchored Scaff. no. | Anchored Scaff.lg (bp)a | Anchored Scaff.cv (%)b |
|---|---|---|---|---|---|---|---|---|
A01 | 41 | 34 | 7 | 34 | 5 | 21 | 20867750 | 7.35 |
A02 | 42 | 32 | 10 | 32 | 8 | 18 | 27594208 | 9.72 |
A03 | 72 | 61 | 11 | 61 | 9 | 9 | 31313061 | 11.03 |
A04 | 30 | 25 | 5 | 25 | 2 | 14 | 16383005 | 5.77 |
A05 | 59 | 46 | 13 | 46 | 8 | 17 | 21627037 | 7.62 |
A06 | 57 | 46 | 11 | 46 | 8 | 14 | 25300054 | 8.91 |
A07 | 54 | 42 | 12 | 42 | 9 | 10 | 21622174 | 7.62 |
A08 | 29 | 25 | 4 | 25 | 3 | 11 | 16765946 | 5.91 |
A09 | 81 | 65 | 16 | 65 | 11 | 32 | 36142156 | 12.73 |
A10 | 42 | 39 | 3 | 39 | 3 | 6 | 17594535 | 6.20 |
Total | 507 | 415 | 92 | 415 | 66 | 152 | 235209926 | 82.86 |