Table 6 Summary of repetitive sequences in the P.monodon genome
| Â | Â | Length (bp) | Total length (%) | |
|---|---|---|---|---|
Type | RepeatMasker | RECON | Â | |
Retrotransposon | Non-LTRs | 16,570 | 627,361 | 643,931 (5.79%) |
| Â | Penelope | 0 | 378,442 | 378,442 (3.40%) |
| Â | LTRs | 77,962 | 79,479 | 157,441 (1.42%) |
DNA transposon | 14,817 | 0 | 14,817 (0.13%) | |
WSSV-related PREs | 0 | 2,399,849 | 2,399,849 (21.59%) | |
Unknown/unannotated PREs | 309 | 1,285,334 | 1,285,643 (11.57%) | |
Microsatellites | Â | 807,927 | 0 | 807,927 (7.27%) |
Total | Â | Â | Â | 5,688,050 (51.18%) |