Skip to main content

Table 6 Summary of repetitive sequences in the P.monodon genome

From: Fosmid library end sequencing reveals a rarely known genome structure of marine shrimp Penaeus monodon

   Length (bp) Total length (%)
Type RepeatMasker RECON  
Retrotransposon Non-LTRs 16,570 627,361 643,931 (5.79%)
  Penelope 0 378,442 378,442 (3.40%)
  LTRs 77,962 79,479 157,441 (1.42%)
DNA transposon 14,817 0 14,817 (0.13%)
WSSV-related PREs 0 2,399,849 2,399,849 (21.59%)
Unknown/unannotated PREs 309 1,285,334 1,285,643 (11.57%)
Microsatellites   807,927 0 807,927 (7.27%)
Total     5,688,050 (51.18%)