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Table 3 DEFB cluster copy numbers (CN) per diploid genome of NA12760 estimated by the ratio of reads per haplotype

From: Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing

region/gene reads read numbers with different haplotypes read ratio CN
DEFB4 51 17:34 1:2 (3n) 6
  89 16:62:11 1:4:1 6
down 45 10:26:9 1:3:1 5
stream 35 11:14:4:6 2:3:1:1 7
DEFB103 102 25:12:19:13:12:21 2:1:1:1:1:2 8
  33 8:6:11:8 1:1:2:1 5
  64 9:8:47 1:1:4 6
SPAG11 38 15:23 2:3 5
  60 29:16:15 2:1:1 4
  100 50:16:34 3:1:2 6
  42 7:12:15:8 1:2:2:1 6
  63 22:11:12:18 2:1:1:2 6
  54 20:27:7 3:4:1 8
  37 20:10:7 3:2:1 6
  35 19:16 1:1 (2n) 6
  48 14:21:13 2:3:2 7
  30 4:21:5 1:5:1 7
  32 8:14:10 2:3:2 7
  48 7:22:19 1:3:3 7
  48 9:20:6:13 1:2:1:1 5
  62 13:18:13:7:11 2:2:2:1:1 8
  34 6:13:15 1:2:3 6
  33 12:21 1:2 (3n) 6
  40 6:8:26 1:1:4 6
  33 3:4:21:5 1:1:4:1 7
  53 12:33:8 1:3:1 5
DEFB104 36 17:7:12 3:1:2 6
  37 14:16:7 2:2:1 5
  53 10:17:17:9 1:2:2:1 6
  32 20:12 2:1 (3n) 6
  30 13:10:7 3:2:1 6
  30 14:6:6:4 3:1:1:1 6
  86 63:26 3:1 4
  62 6:8:21:27 1:1:3:3 8
  65 13:23:15:14 1:2:1:1 5
  31 6:6:6:5:8 1:1:1:1:2 6
  38 10:10:5:3:10 2:2:1:1:2 8
  29 6:7:16 1:1:3 5
  31 9:14:8 2:3:2 7
  33 6:27 1:5 6
DEFB106 100 32:12:18:38 2:1:1:2 6
  77 21:13:31:12 2:1:3:1 7
  30 8:22 1:3 (4n) 8
  63 20:8:22:13 2:1:2:1 6
  61 17:6:24:14 2:1:3:2 8
  39 7:5:27 1:1:4 6
DEFB107 28 5:5:5:13 1:1:1:3 6
  97 78:19 4:1 5
    total number of reads 2.397
    total number of CN estimations 48
    CN per diploid genome - average 6,17
    - max 8
    - min 4
    - STDEV 1,06