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Table 1 Protein products of genes classified as highly expressed (PHX) and moderately highly expressed (PX) according to codon usage.

From: Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942

Gen name* length (bp) Product G+C desviation (SD) N of HIP1 motifs
Synpcc7942_0260 824 ATPase 0 3
Synpcc7942_0442 497 ammonium transporter 0 1
Synpcc7942_0656 461 photosystem II 44 kDa subunit reaction center protein 0 0
Synpcc7942_0697 508 photosystem II core light harvesting protein 0 1
Synpcc7942_0885 694 elongation factor G 0 1
Synpcc7942_0977 333 Phosphoribulokinase 0 0
Synpcc7942_1096 456 thiamine biosynthesis protein ThiC 0 1
Synpcc7942_1231 324 apocytochrome f 0 0
Synpcc7942_2048 734 photosystem I P700 chlorophyll a apoprotein A2 0 2
Synpcc7942_2049 763 photosystem I P700 chlorophyll a apoprotein A1 0 1
Synpcc7942_2463 417 S-adenosylmethionine synthetase 0 0
Synpcc7942_2468 634 molecular chaperone DnaK 0 0
Synpcc7942_0143 326 pyruvate/2-oxoglutarate dehydrogenase (E1) component 0 0
Synpcc7942_0169 723 glutamate-ammonia ligase, glutamine synthetase type III 0 2
Synpcc7942_0282 427 serine hydroxymethyltransferase 0 1
Synpcc7942_0297 613 FtsH peptidase 0 2
Synpcc7942_0328 705 phycobilisome core-membrane linker polypeptide 0 1
Synpcc7942_0336 505 F0F1 ATP synthase subunit alpha 0 2
Synpcc7942_0385 457 geranylgeranyl reductase 0 2
Synpcc7942_0424 360 photosystem q(b) protein 0 0
Synpcc7942_0479 604 GTP-binding protein LepA 0 3
Synpcc7942_0538 668 Transketolase 0 3
Synpcc7942_0645 453 glutamate-1-semialdehyde aminotransferase 0 1
Synpcc7942_0685 555 chaperonin GroEL 0 2
Synpcc7942_0694 307 30S ribosomal protein S1 0 0
Synpcc7942_0734 624 hypothetical protein 0 2
Synpcc7942_0884 409 elongation factor Tu 0 1
Synpcc7942_0942 630 FtsH peptidase 0 1
Synpcc7942_0978 403 ferredoxin-NADP oxidoreductase 0 0
Synpcc7942_1426 472 ribulose bisophosphate carboxylase 0 2
Synpcc7942_1439 533 NAD(P)H-quinone oxidoreductase subunit 4 0 0
Synpcc7942_1443 357 fructose-1,6-bisphosphate aldolase 0 0
Synpcc7942_1463 543 Porin 0 1
Synpcc7942_1464 531 Porin 0 0
Synpcc7942_1522 1100 DNA-directed RNA polymerase subunit beta 0 1
Synpcc7942_1523 624 DNA-directed RNA polymerase subunit gamma 0 0
Synpcc7942_1524 1318 DNA-directed RNA polymerase subunit beta' 0 4
Synpcc7942_1525 597 GTP-binding protein TypA 0 1
Synpcc7942_1607 518 porin; major outer membrane protein 0 1
Synpcc7942_1719 475 isocitrate dehydrogenase 0 2
Synpcc7942_1782 430 threonine synthase 0 1
Synpcc7942_1907 358 magnesium-protoporphyrin IX monomethyl ester cyclase 0 0
Synpcc7942_2091 612 NAD(P)H-quinone oxidoreductase subunit F 0 5
Synpcc7942_2093 430 CO2 hydration protein 0 1
Synpcc7942_2156 473 L-glutamine synthetase 0 1
Synpcc7942_2160 384 alanine-glyoxylate aminotransferase 0 0
Synpcc7942_2313 544 chaperonin GroEL 0 1
Synpcc7942_2315 484 F0F1 ATP synthase subunit beta 0 1
Synpcc7942_2444 337 phosphate binding protein 0 0
Synpcc7942_2524 474 trigger factor 0 2
  1. *PHX genes are shown in black, PX otherwise.