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Table 1 Liver transcripts corresponding to the top 100 most significant features exhibiting differential expression between diets

From: Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis

Accession or probe number

Gene

VO/FO

ANOVA p-value

  

Lean

Fat

 

Metabolism

Lipid metabolism

can_D6D_S1B04

Delta-6 fatty acyl desaturase

2.8

1.9

<0.0001

can_D6D_S1B03

Delta-6 fatty acyl desaturase

2.1

1.4

<0.0001

can_D5D_S1B01

Delta-5 fatty acyl desaturase

2.3

1.5

<0.0001

can_D6O_S1B06

Delta-6 fatty acyl desaturase

2.0

1.4

<0.0001

CK887422

Delta-6 fatty acyl desaturase

2.0

1.8

<0.0001

EG647320

Delta-6 fatty acyl desaturase

1.8

1.4

0.0001

CK876943

Fatty acid synthase

1.4

1.6

0.0002

can_D5D_S1B02

Delta-5 fatty acyl desaturase

2.1

1.2

0.0003

CK894344

Phospholipase D3

- 1.1

- 1.2

0.0006

EG647463

Cytochrome P450 reductase

- 1.4

- 1.1

0.0017

liv_lrr_01F07

Angiopoietin-like 3

1.2

1.4

0.0020

can_D5O_S1B05

Delta-6 fatty acyl desaturase

1.5

1.2

0.0045

CK879648

Squalene monooxygenase

1.9

1.1

0.0058

Protein and amino acid metabolism

CK893821

Sequestosome 1or ubiquitin-binding protein P62

- 1.3

- 1.1

0.0022

CK884400

Kynureninase (L-kynurenine hydrolase)

1.3

1.2

0.0065

Carbohydrate metabolism

int_oss_T4F08

Alpha-enolase putative

- 1.2

- 1.0

0.0007

liv_lrr_01A06

Glutamine-fructose-6-phosphate transaminase 1

1.2

1.8

0.0032

CO470771

Glycerol kinase

1.1

1.1

0.0062

Xenobiotic and oxidant metabolism

AJ425332

Thioredoxin domain-containing protein 8

- 1.3

- 1.3

0.0024

EG355339

Glutathione S-transferase A

- 1.4

- 1.4

0.0036

Transport/intracellular trafficking

CK886667

Na/K ATPase

1.5

1.1

<0.0001

CN181143

Coatomer subunit alpha

1.2

1.4

0.0004

DW588711

Synaptic vesicle glycoprotein 2B

1.1

1.1

0.0004

CK894482

Taurine transporter

- 1.3

- 1.3

0.0019

CK887866

ABC-type branched-chain amino acid transport systems ATPase component

1.2

1.1

0.0022

CO470399

Sodium/potassium-transporting

- 1.2

- 1.2

0.0044

EG647422

Transferrin

- 1.2

- 1.1

0.0047

EG648286

ATP-binding cassette sub-family B member 10, mitochondrial

1.2

1.3

0.0055

AM083913

Chromatin modifying protein 2a

- 1.3

- 1.2

0.0068

Regulation of transcription

CK894063

Zinc finger protein 183

- 1.5

- 1.3

0.0003

CK890154

Butyrate response factor 2

1.5

1.1

0.0043

EG648112

Retrovirus-related Pol polyprotein

1.1

1.3

0.0046

CK885196

CCAAT/enhancer binding protein delta1

1.2

1.2

0.0052

CK890573

MADS box protein AP1b

1.2

1.2

0.0053

CK883722

Y-box binding protein

1.1

1.3

0.0067

Translation

AM402452

Phenylalanyl-tRNA synthetase, alpha subunit

1.4

1.9

0.0022

Signalling/Signal transduction

CK886572

GSK-3-binding protein

1.9

1.0

0.0002

CK892148

Growth factor receptor-bound protein 7

- 1.5

- 1.1

0.0028

ova_opk_09K06

Phosphoinositide 3-protein kinase

- 1.1

- 1.3

0.0031

CK873849

Receptor-type tyrosine-protein phosphatase beta precursor

- 1.1

- 1.1

0.0036

DW590775

Myozenin-1

1.6

1.5

0.0055

Immune response

EG647383

Human leukocyte antigen (HLA) class II histocompatibility

1.1

1.2

0.0008

AM402762

Complement component C8 alpha chain

1.3

1.7

0.0018

EG649410

D-dopachrome tautomerase

1.4

1.1

0.0019

AJ425750

Non-histone chromosomal protein H6

1.1

1.3

0.0024

CK884265

Ganglioside GM2 activator

1.3

1.1

0.0030

AM402841

Complement component C8 alpha chain

1.5

2.1

0.0032

CK886548

T cell receptor (TCR)-alpha/delta locus

- 1.2

- 1.0

0.0041

spl_sts_18A08

Leukotriene B4 receptor 1 putative

- 1.4

- 1.1

0.0047

CK880083

Interleukin-15 precursor

1.1

1.3

0.0067

AJ425732

CD97 antigen isoform 2

1.2

1.1

0.0066

Miscellaneous and unknown function

CK897269

Biotinidase precursor

1.3

1.7

0.0002

AM402518

Biotinidase

1.4

1.9

0.0006

CK894173

EFHD2 (EF hand domain containing2)

1.2

1.1

0.0007

kid_cki_A1E04

S100-A1 calcium binding

1.4

1.1

0.0009

CO469646

beta B3-crystallin

- 1.1

- 1.0

0.0012

CO469710

Transmembrane protein 30A

- 1.1

- 1.2

0.0019

AJ425502

Heme oxygenase 1

- 2.7

- 1.7

0.0024

CK885237

EF-hand domain-containing protein D2

1.1

1.1

0.0026

AJ425502

Heme oxygenase 1

- 2.6

- 1.4

0.0037

DW588567

S100 calcium binding protein beta subunit

1.1

1.1

0.0042

CK897725

Type-1 growth hormone

1.1

1.1

0.0053

BM414485

Apoptosis-inducing factor mitochondrion-associated inducer

1.5

1.4

0.0054

BM414504

Syndecan 2

- 1.2

- 1.1

0.0061

BI468143

Anaphase-promoting complex subunit CDC26

- 1.3

- 1.3

0.0064

CK885116

17-beta hydroxysteroid dehydrogenase 13

- 1.1

- 1.4

0.0065

  1. Annotated features (65% of all clones) are arranged by categories of biological function and, within these, by decreasing significance (assessed by two-way ANOVA). Also indicated are the GenBank accession numbers for each clone (or, when not available, the probe number is given instead) and the expression ratio between fish fed VO and those fed FO, for each genotype (Lean and Fat).
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BMC Genomics

ISSN: 1471-2164

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