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Table 3 Description of five QTL for cyanogenic potential in cassava and their functional annotation

From: A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population

Environments ag QTLs Loci LG ac LOD %expl Phenotype mean (ppm)* Location on physical map Functional annotation
         ac ad bc bd   
Rayong, 2008 4.4 CN08R1 CA227 5 3.0 3.77 16.1 92.0 72.2 70.4 88.3 Scaffold08093 at 10.8 kbp Unknown
Rayong, 2009 4.5 CN09R1 CA141 10 2.8 5.75 26.0 23.4 29.6 26.5 45.6 Scaffold00399 at 564.7 kbp Unknown
   CN09R2 CA344 11 2.4 4.05 15.9 23.4 31.2 20.1 36.5 Scaffold10276 at 15 kbp Nucleotide-binding protein of 35 kDa
Lop Buri, 2009 4.4 CN09L1 CA18 2 3.0 4.58 23.0 62.3 50.4 80.3 61.9 Scaffold10261 at 564 kbp β-1,3-N-Acetylglucosaminyl transferase
   CN09L2 CA76 5 3.2 4.22 18.5 62.3 38.2 41.6 51.9 Scaffold02810 at 207.3 kbp Adenosine/Guanosine diphosphatase
  1. Genetic metrics for each QTL: Detail of each QTL affecting cyanogenic potential from evaluating in 2008 at Rayong (RY08), 2009 at Rayong (RY09) and 2009 at Lop Buri (LB09)
  2. αc Chromosome wide significance threshold
  3. αg Genome wide significance threshold
  4. %expl Percentage of phenotypic variation explain
  5. * mg HCN equivalents kg-1 fresh weight (ppm)
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BMC Genomics

ISSN: 1471-2164

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