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Table 1 An. gambiae RNA-seq Mapping and Expression Data

From: Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding

 

Overall Totals

Weighted Mapped Read Counts

 

Gene Expression Summary

  

tissue type

reads

mapped reads (%)

transcriptome v3.6 (%)

nuclear gnm.

mito. gnm.

Gene Count

median RPKM

mean RPKM

std.dev. RPKM

female bodies

27877821

25358733 (90.96)

16606092 (59.57)

14680019

263602

12145

8.87

59.74

543.15

female antennae

25980364

24123025 (92.85)

14617276 (56.26)

15280026

80727

11722

9.38

59.22

732.65

female palps

27449612

25984839 (94.66)

15293125 (55.71)

16700334

420897

12297

10.37

56.44

496.05

male bodies

31876060

30226447 (94.82)

17603111 (55.22)

16016349

2408310

12253

8.34

54.01

424.05

male antennae

33950770

32144101 (94.68)

18231088 (53.70)

21427148

241273

11986

10.34

46.01

229.14

male palps

35705184

33339629 (93.37)

22596709 (63.29)

17625684

536952

12146

8.40

49.14

286.49

  1. Cells in each row contain information corresponding to the tissue type listed. Overall Totals: Reads: total number of short reads generated from each sample. Mapped reads: the number (and percentage) of total reads that were mapped to the transcriptome, nuclear genome, and/or the mitochondrial genome. Weighted Mapped Read Counts: Transcriptome v3.6: the number (and percentage) of reads mapped to version 3.6 of the An. gambiae transcriptome. Nuclear gnm.: the number the number of reads mapped to the assembled An. gambiae genome. Mito. gnm.: the number reads mapped to the An. gambiae mitochondrial genome. Gene Expression Summary: Gene count: the total number of annotated genes in each tissue type having an RPKM (R eads P er K ilobase per M illion) greater than zero. Mean, median and std. deviation of the RPKM values for each tissue type.