Skip to main content

Table 1 An. gambiae RNA-seq Mapping and Expression Data

From: Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding

  Overall Totals Weighted Mapped Read Counts   Gene Expression Summary   
tissue type reads mapped reads (%) transcriptome v3.6 (%) nuclear gnm. mito. gnm. Gene Count median RPKM mean RPKM std.dev. RPKM
female bodies 27877821 25358733 (90.96) 16606092 (59.57) 14680019 263602 12145 8.87 59.74 543.15
female antennae 25980364 24123025 (92.85) 14617276 (56.26) 15280026 80727 11722 9.38 59.22 732.65
female palps 27449612 25984839 (94.66) 15293125 (55.71) 16700334 420897 12297 10.37 56.44 496.05
male bodies 31876060 30226447 (94.82) 17603111 (55.22) 16016349 2408310 12253 8.34 54.01 424.05
male antennae 33950770 32144101 (94.68) 18231088 (53.70) 21427148 241273 11986 10.34 46.01 229.14
male palps 35705184 33339629 (93.37) 22596709 (63.29) 17625684 536952 12146 8.40 49.14 286.49
  1. Cells in each row contain information corresponding to the tissue type listed. Overall Totals: Reads: total number of short reads generated from each sample. Mapped reads: the number (and percentage) of total reads that were mapped to the transcriptome, nuclear genome, and/or the mitochondrial genome. Weighted Mapped Read Counts: Transcriptome v3.6: the number (and percentage) of reads mapped to version 3.6 of the An. gambiae transcriptome. Nuclear gnm.: the number the number of reads mapped to the assembled An. gambiae genome. Mito. gnm.: the number reads mapped to the An. gambiae mitochondrial genome. Gene Expression Summary: Gene count: the total number of annotated genes in each tissue type having an RPKM (R eads P er K ilobase per M illion) greater than zero. Mean, median and std. deviation of the RPKM values for each tissue type.