|
gene
|
length (in aa)
|
sequence identity
|
Ka/Ks
|
ORF
|
length (in aa)
|
sequence identity
|
Ka/Ks
|
|---|
|
cob
|
442
|
0.91
|
0.012
|
ymf56
|
81
|
0.73
|
0.067
|
|
cox1
|
745
|
0.93
|
0.019
|
ymf57
|
105
|
0.77
|
0.069
|
|
cox2
|
577
|
0.84
|
0.022
|
ymf59
|
127
|
0.40
|
0.340
|
|
atp9
|
75
|
1.00
|
0.001
|
ymf61
|
189
|
0.40
|
0.298
|
|
yejR
a
|
447
|
0.47
|
0.242
|
ymf63
a
|
525
|
0.44
|
0.258
|
|
nad1_a
|
287
|
0.93
|
0.012
|
ymf64
a
|
1712
|
0.56
|
0.168
|
|
nad1_b
|
63
|
0.71
|
0.027
|
ymf65
b
|
365
|
-
|
-
|
|
nad2
|
167
|
0.67
|
0.093
|
ymf66
b
|
412
|
-
|
-
|
|
nad3
|
120
|
0.83
|
0.033
|
ymf67
b
|
354
|
-
|
-
|
|
nad4
|
501
|
0.70
|
0.062
|
ymf68
|
395
|
0.76
|
0.044
|
|
nad4L
|
115
|
0.64
|
0.070
|
ymf76
b
|
399
|
-
|
-
|
|
nad5
|
597
|
0.75
|
0.049
|
ymf78
|
69
|
0.48
|
0.298
|
|
nad6
|
256
|
0.73
|
0.064
|
ymf79
|
73
|
0.38
|
0.323
|
|
nad7
|
423
|
0.91
|
0.010
|
ymf80
|
97
|
0.68
|
0.076
|
|
nad9
|
184
|
0.67
|
0.072
|
ymf83
|
168
|
0.55
|
0.206
|
|
nad10
|
154
|
0.95
|
0.006
|
ymf84
|
158
|
0.33
|
0.291
|
|
rps3
a
|
363
|
0.57
|
0.195
|
ymf87
c
|
107
|
-
|
-
|
|
rps12
|
139
|
0.84
|
0.024
| | | | |
|
rps13
|
244
|
0.66
|
0.049
| | | | |
|
rps14
|
102
|
0.59
|
0.104
| | | | |
|
rps19
d
|
88
|
0.46
|
0.188
| | | | |
|
rpl2
|
265
|
0.68
|
0.523
| | | | |
|
rpl6
|
178
|
0.71
|
0.055
| | | | |
|
rpl14
|
119
|
0.75
|
0.030
| | | | |
|
rpl16
|
166
|
0.74
|
0.047
| | | | |
- The sequence identity values were calculated from amino acid sequences. The Ka/Ks ratio was estimated using the method of Goldman and Yang [47] as implemented in the program Ka/Ks_Calculator [28].
- a yejR, rps3, ymf63 and ymf64 were considerably longer in the mtDNA of P. caudatum. For comparative analyses the sequences were adjusted to the gene length in P. tetraurelia.
- b ymf65, ymf66, ymf67 and ymf76 each appear to be equivalent to two adjacent ORFs in P. tetraurelia. Comparative data are omitted.
- c ymf87 was only found in P. caudatum
- d rps19 in P. tetraurelia was annotated during the present work
