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Table 1 List of most highly induced genes upon L-cysteine deprivation

From: Global analysis of gene expression in response to L-Cysteine deprivation in the anaerobic protozoan parasite Entamoeba histolytica

Probe set ID Accession numbers Common Names Basal Expression (log2) 3 h 6 h 12 h 24 h 48 h p value
EHI_173950_at XM_647419 Major facilitator superfamily (MFS) transporter 6.11 + 4.1 + 14.6 + 10.0 + 4.7 + 2.6 3.0E-07
EHI_138480_at XM_650038 Iron-sulfur flavoprotein, putative 8.40 + 3.6 + 6.8 + 9.8 + 5.4 + 4.2 4.5E-08
EHI_025710_at XM_644279 Iron-sulfur flavoprotein, putative 7.17 + 3.6 + 5.4 + 8.7 + 5.2 + 3.9 1.0E-06
13.m00350_at XM_651312 Hypothetical protein 2.73 - 1.0 + 2.4 + 7.8 + 5.4 + 6.5 2.4E-04
EHI_176810_at XM_644746 Hypothetical protein 3.53 + 4.8 + 8.8 + 6.0 + 1.2 - 1.3 4.6E-04
EHI_130490_at XM_643338 Hypothetical protein 7.42 + 1.7 + 1.9 + 5.8 + 3.5 + 1.7 1.8E-05
EHI_091050_at XM_645468 Zinc finger protein, putative (IBR superfamily) 5.39 + 2.9 + 9.1 + 5.7 - 1.4 - 1.7 1.3E-06
EHI_080280_at XM_644430 Glu6-phosphate N-acetyltransferase. putative 3.79 + 8.6 + 6.2 + 5.5 + 1.3 - 1.3 3.3E-05
EHI_032670_s_at XM_645799 Iron sulfur flavoprotein like, putative 7.47 + 1.5 + 3.5 + 5.4 + 3.9 + 4.0 3.4E-06
870.m00013_x_at XM_642792 Hypothetical protein 2.54 + 3.4 + 6.4 + 5.0 + 1.3 + 1.9 6.5E-04
EHI_096770_at XM_650580 Acetyltransferase, putative 7.01 + 1.9 + 3.4 + 4.8 + 3.7 + 4.2 4.9E-05
EHI_137260_at XM_647486 Hypothetical protein 2.97 + 3.7 + 4.4 + 4.8 + 2.4 + 2.6 2.0E-03
65.m00145_x_at XM_648920 Hypothetical protein 3.08 + 1.2 + 3.3 + 4.7 + 1.1 - 1.6 6.1E-06
EHI_062300_at XM_645096 Hypothetical protein 4.10 + 1.7 + 1.9 + 4.7 + 2.7 + 2.1 1.7E-03
337.m00049_x_at XM_644075 Hypothetical protein 2.48 + 2.9 + 5.2 + 4.5 + 1.7 + 1.0 1.5E-03
EHI_148740_at XM_001913345 Hypothetical protein 8.19 + 1.9 + 2.7 + 4.4 + 1.7 + 1.3 1.0E-06
79.m00141_x_at XM_648476 Hypothetical protein 2.90 + 2.0 + 3.1 + 4.4 + 1.7 + 1.2 2.4E-02
EHI_189190_x_at XM_644225 Hypothetical protein 3.25 + 1.7 + 4.8 + 4.4 - 1.0 - 1.9 4.3E-05
EHI_039720_at XM_642957 Hypothetical protein 2.53 - 1.0 + 2.1 + 4.4 + 3.3 + 1.4 1.6E-05
EHI_051040_s_at XM_647890 Hypothetical protein 6.82 + 1.5 + 2.7 + 4.4 + 2.5 + 2.8 1.9E-03
EHI_139080_at XM_643428 Longevity-assurance family protein 5.38 - 2.3 + 1.2 + 4.4 + 2.3 + 2.0 4.4E-06
EHI_067230_x_at XM_647567 Hypothetical protein 6.18 + 9.7 + 13.6 + 4.2 - 1.3 - 1.1 1.4E-07
EHI_055680_at XM_646949 Heat shock protein, Hsp20 family, putative 5.63 + 2.0 + 4.6 + 4.2 + 1.6 + 1.2 1.4E-03
EHI_086500_s_at XM_646060 Short chain dehydrogenase 4.86 + 6.1 + 8.1 + 4.2 + 1.1 - 1.4 1.2E-04
EHI_148970_s_at XM_652477 Regulator of nonsense transcripts, putative 9.86 + 5.9 - 1.0 - 4.1 - 5.1 - 9.7 1.5E-07
EHI_139090_at XM_643429 Hypothetical protein 5.95 + 1.6 + 1.9 + 4.1 + 1.3 - 1.5 6.2E-05
167.m00129_at XM_646319 Hypothetical protein 3.36 + 2.4 + 4.8 + 4.0 + 2.0 + 1.9 1.6E-03
EHI_110840_s_at XM_649191 Regulator of nonsense transcripts, putative 9.73 + 6.5 + 1.0 - 4.0 - 4.6 - 8.7 1.2E-07
EHI_178130_at XM_646412 Hypothetical protein 5.09 + 2.0 + 3.2 + 4.0 + 2.4 + 2.8 5.9E-05
EHI_110370_at XM_651955 Hypothetical protein 4.52 - 1.3 + 1.3 + 3.9 + 2.6 + 4.1 2.0E-04
EHI_070810_x_at XM_649317 Regulator of nonsense transcripts, putative 4.76 + 7.4 - 1.1 - 3.9 - 4.3 - 4.8 1.6E-05
EHI_004990_at XM_647768 Ankyrin, putative 6.30 + 2.0 + 4.3 + 3.8 + 2.4 + 3.0 5.1E-05
EHI_023330_at XM_650547 Hypothetical protein 9.16 + 6.5 + 1.4 - 3.6 - 7.1 - 8.3 8.2E-07
EHI_005160_s_at XM_647757 Hypothetical protein 2.94 + 2.9 + 4.5 + 3.4 + 1.6 + 1.2 6.7E-03
EHI_028940_at XM_647571 Hypothetical protein 8.44 + 6.1 + 6.5 + 3.4 - 1.0 - 1.2 1.4E-07
EHI_033240_x_at XM_645809 Riboflavin kinase/FAD synthetase, putative 6.61 + 1.4 + 4.6 + 3.4 + 3.0 + 2.6 8.6E-07
493.m00030_x_at XM_643175 Hypothetical protein 8.73 + 3.9 + 5.2 + 3.3 - 1.8 - 1.9 1.4E-07
15.m00356_at XM_651173 Hypothetical protein 7.03 + 3.4 + 4.2 + 3.3 + 1.7 + 2.1 1.8E-03
EHI_110480_at XM_651901 Hypothetical protein 4.51 + 2.3 + 4.2 + 3.3 + 2.9 + 1.7 1.5E-04
EHI_140620_x_at XM_645555 Hypothetical protein 2.32 + 2.1 + 5.9 + 3.2 + 1.3 + 1.2 2.3E-02
EHI_136430_at XM_650171 Hypothetical protein 4.08 + 7.5 + 7.8 + 3.2 - 2.3 + 1.0 4.1E-06
373.m00052_s_at XM_643804 Hypothetical protein 6.53 + 4.1 + 2.0 + 3.1 + 1.0 - 1.1 7.9E-04
EHI_141030_at XM_649510 DNA methyltransferase, putative 5.97 + 2.4 + 1.7 + 2.3 + 3.9 + 4.1 3.6E-05
EHI_178520_at XM_647939 Regulator of nonsense transcripts, putative 6.30 + 6.2 - 1.4 - 2.1 - 1.9 - 1.4 8.7E-06
EHI_142270_at XM_648119 Hypothetical protein 8.27 + 3.7 + 4.1 + 2.0 - 1.0 - 1.1 2.9E-04
EHI_014340_at XM_649988 Hypothetical protein 6.45 + 2.7 + 5.2 + 1.9 + 1.1 - 1.1 4.9E-05
EHI_064440_at XM_648922 Hypothetical protein 5.03 - 1.5 - 1.2 + 1.7 + 2.5 + 4.0 2.0E-03
EHI_120930_s_at XM_649257 Protein kinase domain containing protein 2.61 + 6.8 - 1.0 + 1.5 + 2.3 + 1.8 2.4E-03
637.m00013_s_at XM_642916 Regulator of nonsense transcripts, putative 2.92 + 6.6 - 1.2 - 1.5 - 1.5 - 1.1 3.6E-05
EHI_031640_at XM_648447 Hypothetical protein 6.98 + 2.3 - 3.1 + 1.5 + 3.6 + 5.8 1.8E-06
EHI_103640_at XM_643960 Protein kinase domain containing protein 3.10 + 5.2 - 1.0 - 1.4 + 1.4 + 1.2 5.6E-04
EHI_014910_s_at XM_001914428 Hypothetical protein 2.99 + 6.0 + 1.5 - 1.3 + 1.4 - 1.2 2.7E-04
EHI_038910_at XM_651787 Hypothetical protein 2.57 + 5.3 + 2.3 + 1.2 + 1.6 - 1.0 5.1E-03
EHI_190460_at XM_646352 Amino acid transporter, putative 3.11 - 1.2 - 1.4 + 1.2 + 2.2 + 3.9 2.9E-03
EHI_084710_at XM_650002 Hypothetical protein 4.27 + 5.3 + 2.3 + 1.1 + 2.2 + 1.2 5.1E-04
EHI_054680_at XM_646972 Hypothetical protein 3.09 - 1.2 - 1.4 - 1.1 + 2.7 + 5.9 4.8E-04
50.m00196_s_at XM_649450 Hypothetical protein 4.95 + 4.2 - 1.5 - 1.1 + 1.2 - 1.4 9.0E-05
EHI_046040_s_at XM_645992 Hypothetical protein 5.08 + 6.5 + 1.5 - 1.1 - 1.0 - 1.6 1.1E-05
  1. The probe set IDs, accession numbers, common names, basal expressions, fold changes, and p values of most highly induced genes upon L-cysteine deprivation are shown.