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Table 2 List of most highly down-regulated genes upon L-cysteine deprivation

From: Global analysis of gene expression in response to L-Cysteine deprivation in the anaerobic protozoan parasite Entamoeba histolytica

Probe set ID Accession numbers Common Names Basal Expression (log2) 3h 6h 12h 24h 48h p value
72.m00179_at XM_648717 Hypothetical protein 8.8 + 1.1 +1.4 - 2.8 - 15.3 - 22.8 2.5E-06
EHI_045340_s_at XM_648481 NADPH-dependent oxidoreductase (EhNO2) 10.6 - 1.9 -1.9 - 3.0 - 10.6 - 8.3 1.4E-07
EHI_023330_at XM_650547 Hypothetical protein 9.2 + 6.5 +1.4 - 3.6 - 7.1 - 8.3 8.2E-07
EHI_148970_s_at XM_652477 Regulator of nonsense transcripts, putative 9.9 + 5.9 -1.0 - 4.1 - 5.1 - 9.7 1.5E-07
EHI_110840_s_at XM_649191 Regulator of nonsense transcripts, putative 9.7 + 6.5 +1.0 - 4.0 - 4.6 - 8.7 1.2E-07
EHI_070810_x_at XM_649317 Regulator of nonsense transcripts, putative 4.8 + 7.4 -1.1 - 3.9 - 4.3 - 4.8 1.6E-05
EHI_049960_at XM_651359 Hypothetical protein 7.8 + 2.4 -1.6 - 5.1 - 3.3 - 2.9 5.1E-07
EHI_182260_s_at XM_001914319 Cysteine protease, putative 7.8 - 1.7 -3.2 - 2.5 - 3.2 - 6.3 2.7E-05
EHI_052890_at XM_645369 Hypothetical protein 9.0 - 1.1 -6.3 - 11.1 - 3.0 - 2.6 3.5E-05
EHI_077280_s_at XM_649853 Leucine rich repeat protein, BspA family 8.4 - 5.4 -6.7 - 2.2 - 2.7 - 1.1 2.5E-03
EHI_178790_at XM_651153 Hypothetical protein 4.7 - 1.7 -5.1 - 1.6 + 2.5 + 3.0 1.2E-04
EHI_094060_s_at XM_001913553 Actin binding protein, putative 9.2 + 1.3 -3.5 - 5.0 - 2.5 - 3.2 1.8E-03
371.m00031_s_at XM_643815 Leucine rich repeat protein 8.3 - 4.3 -3.2 - 2.4 - 2.4 - 1.4 1.5E-02
EHI_049570_at XM_650791 RhoGAP domain containing protein 6.9 + 2.1 -2.3 - 5.0 - 2.3 - 2.6 8.7E-04
EHI_130710_at XM_644068 Myb-like DNA-binding protein 6.3 + 1.3 -1.9 - 4.4 - 2.2 - 1.9 1.6E-05
EHI_197440_at XM_646593 Hypothetical protein 10.6 + 1.5 -2.7 - 4.1 - 1.9 - 2.6 1.0E-03
330.m00075_x_at XM_644126 Hypothetical protein 6.9 + 1.1 +1.0 - 3.3 + 1.8 - 7.2 1.9E-03
EHI_148650_at XM_652381 Leucine rich repeat/phosphatase domain 7.2 - 2.4 -4.5 - 2.9 - 1.7 - 1.6 1.2E-03
   containing protein        
EHI_050660_at XM_651502 Hypothetical protein 7.3 + 1.7 -3.7 - 4.4 - 1.7 - 1.6 8.1E-04
EHI_044890_at XM_652115 Helicase, putative 5.6 - 1.0 -4.3 - 2.3 - 1.6 - 1.4 6.5E-03
49.m00187_x_at XM_649517 Fatty acid elongase, putative 4.8 + 1.3 -5.6 - 5.4 - 1.6 - 1.7 3.3E-05
EHI_094780_s_at XM_001914195 Pescadillo homolog, putative 5.7 + 1.4 -2.9 - 4.0 - 1.6 - 2.1 8.5E-03
260.m00059_s_at XM_644821 Phospholipase D like protein 4.4 + 1.7 -3.6 - 4.2 - 1.6 - 3.0 2.1E-03
EHI_140530_at XM_649099 Hypothetical protein 4.9 + 1.4 -2.3 - 4.5 + 1.6 + 1.3 1.1E-04
EHI_145850_at XM_650629 Hypothetical protein 4.9 + 1.1 -3.2 - 5.8 - 1.5 - 2.0 2.3E-03
EHI_046630_at XM_645444 Rho family GTPase 6.0 - 1.1 -4.4 - 4.4 + 1.5 - 1.2 2.2E-04
EHI_187100_at XM_651384 Hypothetical protein 6.9 - 1.3 -4.4 - 2.4 - 1.5 - 1.1 2.5E-06
849.m00008_s_at XM_642804 Leucine rich repeat protein 7.9 - 5.1 -3.5 - 2.1 - 1.5 - 1.1 1.4E-02
EHI_009840_s_at XM_652013 Hypothetical protein 11.1 - 4.3 -1.2 + 1.4 + 1.5 + 1.6 4.0E-07
EHI_039330_at XM_648669 Hypothetical protein 9.3 + 1.1 -4.3 - 2.9 - 1.5 - 1.4 2.6E-02
266.m00066_s_at XM_644755 Hypothetical protein 7.1 + 1.6 +1.0 - 1.3 + 1.4 - 6.6 1.3E-05
EHI_029500_s_at XM_644980 Hypothetical protein 6.9 + 1.7 -1.0 - 1.4 + 1.4 - 7.4 1.6E-04
216.m00082_x_at XM_645403 Hypothetical protein 6.0 - 2.3 -4.1 - 3.9 - 1.4 - 1.8 4.4E-04
EHI_196770_s_at XM_001914173 Leucine rich repeat protein 8.2 - 3.4 -4.6 - 2.1 - 1.3 + 1.0 2.9E-02
EHI_034590_s_at XM_001914026 Hypothetical protein 7.1 + 1.2 -1.2 - 1.4 + 1.3 - 6.4 5.2E-05
EHI_107660_at XM_644692 Hypothetical conserved, protein 9.1 - 5.7 -2.0 + 1.1 + 1.3 + 1.7 1.1E-06
207.m00059_x_at XM_645533 Actinin-like protein, putative 5.4 + 1.7 -5.4 - 2.4 - 1.3 - 1.6 6.4E-03
EHI_182540_at XM_651612 Hypothetical protein 6.3 + 1.0 -3.2 - 4.1 + 1.3 - 1.0 5.4E-04
EHI_010130_at XM_651999 Hypothetical protein 6.6 - 9.5 -5.3 - 1.3 - 1.3 - 1.1 4.0E-06
EHI_018030_s_at XM_001914259 Hypothetical protein 7.1 + 1.4 +1.0 - 1.1 + 1.3 - 11.0 4.3E-05
EHI_020830_s_at XM_001913952 Hypothetical protein 9.4 + 1.4 -1.3 - 1.2 + 1.3 - 9.9 1.4E-05
EHI_002240_s_at XM_645752 Hypothetical protein 7.1 + 1.4 -1.0 - 1.2 + 1.2 - 6.6 1.9E-04
EHI_196760_s_at XM_643708 Hypothetical protein 9.4 + 1.5 -1.3 - 1.2 + 1.2 - 8.4 1.0E-05
EHI_037700_s_at XM_643865 Hypothetical protein 7.1 + 1.4 -1.1 - 1.3 + 1.2 - 7.0 3.3E-05
EHI_189540_x_at XM_645163 Hypothetical protein 5.0 + 1.5 -4.1 - 2.4 - 1.2 - 2.1 9.9E-03
EHI_196720_s_at XM_643106 Hypothetical protein 7.1 + 1.5 -1.1 - 1.3 + 1.2 - 10.1 2.8E-04
375.m00058_s_at XM_643788 Hypothetical protein 7.1 + 1.5 -1.1 - 1.3 + 1.2 - 6.3 2.6E-04
194.m00101_s_at XM_645779 Hypothetical protein 7.2 + 1.4 -1.1 - 1.4 + 1.2 - 6.9 8.0E-05
372.m00048_s_at XM_643812 Protein kinase domain containing protein 6.0 + 1.1 -4.0 - 4.0 + 1.1 - 1.1 1.8E-04
EHI_144150_s_at XM_001914451 Hypothetical protein 6.3 + 1.8 -1.6 - 2.0 + 1.1 - 13.2 1.5E-04
EHI_020840_s_at XM_001913953 Hypothetical protein 7.4 + 1.7 -1.4 - 1.9 - 1.1 - 18.9 4.1E-05
EHI_103840_at XM_648260 DNA repair protein, putative 6.1 + 1.2 -3.1 - 4.3 + 1.0 - 1.1 3.1E-03
506.m00025_s_at XM_643137 Hypothetical protein 8.3 + 1.1 -1.0 - 1.9 - 1.0 - 6.8 9.9E-04
390.m00061_s_at XM_643707 Hypothetical protein 7.4 + 1.7 -1.5 - 1.7 - 1.0 - 12.6 1.1E-05
EHI_145330_s_at XM_001913871 Hypothetical protein 6.5 + 1.2 -1.1 - 1.8 - 1.0 - 6.5 5.1E-05
EHI_099250_at XM_649200 Hypothetical protein 6.3 + 1.2 -1.9 - 4.0 - 1.0 - 1.3 2.1E-04
EHI_196770_s_at XM_001914173 Hypothetical protein 7.4 + 1.8 -1.4 - 1.5 - 1.0 - 17.1 2.7E-05
190.m00086_s_at XM_645857 Hypothetical protein 8.4 + 1.0 -1.1 - 2.0 - 1.0 -6.4 1.1E-03
  1. The probe set IDs, accession numbers, common names, basal expressions, fold changes, and p values of most highly down-regulated genes upon L-cysteine deprivation are shown.
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BMC Genomics

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