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Table 1 Most relevant genes differentially expressed in P665 compared to Messire after inoculation with M. pinodes

From: Identification of genes differentially expressed in a resistant reaction to Mycosphaerella pinodes in pea using microarray technology

Oligo IDa TIGR IDb Annotation M16c M24 M48 FC
MT015143 BG584806 Repetitive proline-rich cell wall protein 2 precursor 1.39* 1.04* 1.30* I
MT015121 BG586912 Repetitive proline-rich cell wall protein 1 precursor 1.22* 0.69 1.05* I
MT002297 TC79657 Nodulin-like protein 1.19* 0.86* 0.86* I
MT005666 TC83381 Caffeic acid O-methyltransferase 0.17 0.22 0.88* I
MT004103 TC82015 Beta-galactosidase 0.03 -0.08 -1.13* I
MT014461 TC86053 Beta-galactosidase -0.18 -0.40 -1.23* I
MT013510 TC91374 Probable xyloglucan endotransglycosylase -0.44 -1.08* -0.61 I
MT006437 TC77501 Endoxyloglucan transferase -0.71 0.12 -1.42 I
MT014283 TC85611 Caffeoyl-CoA O-methyltransferase -0.87* -0.12 -1.55* I
MT014301 TC76880 Endoxyloglucan transferase -0.90* 0.08 -0.51 I
MT014287 TC76828 Extensin-like protein -1.00* 0.12 -0.43 I
MT001416 TC78670 Expansin -1.01* 0.31 0.19 I
MT014300 BQ136812 Xyloglucan endotransglycosylase -1.05* 0.15 -0.82* I
MT015434 TC86491 Expansin -1.09* -0.44 -1.21* I
MT009043 TC78936 Protein T10O24.17 -1.14* -1.38* -1.06* I
MT007149 TC76727 Putative proline-rich protein APG isolog -1.49* -0.81* -0.45 I
MT015061 TC85201 Lipoxygenase 1.42* 0.88* 0.44 VI
MT013322 TC93346 Peroxisomal copper-containing amine oxidase 0.99* 0.27 0.02 VI
MT006064 TC91378 AT3g62110 0.95* 0.85* 0.67 VI
MT000596 TC86308 Cytochrome P450 78A3 0.74 -0.71 -1.90* VI
MT005593 TC83534 Putative amine oxidase 0.57 -0.14 1.46* VI
MT001070 TC78077 UDP-glycose flavonoid glycosyltransferase 0.57 0.85* 0.20 VI
MT006134 TC81027 4-coumarate--CoA ligase-like protein 0.38 1.37* 0.1 VI
MT006994 TC85176 Lipoxygenase 0.32 0.25 -1.54* VI
MT000200 TC85619 Probable lipoxygenase 0.17 0.07 0.86* VI
MT000193 TC85559 Acetyl-CoA carboxylase 0.13 1.34* 0.06 VI
MT000333 TC85502 Phenylalanine ammonia-lyase 0.06 1.32* -0.44 VI
MT013671 TC84229 Cytochrome p450 0.06 -0.66 -0.87* VI
MT012159 TC83702 Squalene monooxygenase 0.05 0.94* -0.47 VI
MT003115 TC89052 Cytochrome P-450LXXIA1 (cyp71A1) 0.05 0.21 1.23* VI
MT001043 TC77410 Flavanone 3 beta-hydroxylase 0.02 0.15 1.49* VI
MT002497 TC88443 Hyoscyamine 6 beta-hydroxylase -0.13 0.53 0.96* VI
MT009587 TC78460 Flavonol synthase-like protein -0.81* -0.42 -0.47 VI
MT003010 TC89135 Cytochrome P450 71A21 -1.06* -2.15* -0.37 VI
MT014118 TC85168 Lipoxygenase -1.48* -1.73* 0.24 VI
MT002785 TC80364 Tropinone reductase homolog -1.32* -1.40* -1.53* VI
MT012682 TC80051 Amygdalin hydrolase isoform AH I precursor -1.39* -0.48 -0.45 VI
MT001339 TC87447 NAC domain protein NAC1 1.26* 1.11* 0.28 VIII
MT009598 TC79845 Ethylene responsive element binding factor-like 1.09* 1.43* 0.39 VIII
MT008649 TC87796 EBNA-1 nuclear protein 1.06* 1.00* 0.60 VIII
MT005976 TC93710 Promoter-binding factor-like protein 1.03* 0.91* 0.80 VIII
MT000362 TC77110 Putative steroid membrane binding protein 1.01* 1.01* 1.17* VIII
MT016167 BI262875 GRAS family transcription factor 0.90* 0.66 0.13 VIII
MT015261 TC76796 Transcription factor JERF1 0.89* 0.97* 0.29 VIII
MT016157 BE319790 Pathogenesis related transcriptional factor and ERF 0.88* 0.02 -0.29 VIII
MT002827 TC80713 Probable cysteinyl-tRNA synthetase 0.86* 0.83* 0.38 VIII
MT008661 TC87393 Probable CCCH-type zinc finger protein 0.85* 0.24 -0.27 VIII
MT016437 AJ848040 Probable C2H2 type zinc finger protein ID1 like 0.33 0.86* -0.13 VIII
MT011589 TC87048 F5M15.3 -0.07 -1.13* -1.98* VIII
MT008378 TC87360 Chromosome chr7 scaffold_31 whole genome shotgun sequence -0.19 -0.15 -0.83* VIII
MT008731 TC78273 Putative transcription factor APFI -0.31 -0.88* -0.13 VIII
MT015990 TC76565 AT3g16857 -0.40 -1.41* -0.50 VIII
MT013325 TC84058 GATA-binding transcription factor-like protein -0.52 -0.39 -1.09* VIII
MT009202 TC77895 AT4g00150 -0.58 0.48 1.51* VIII
MT011704 TC91195 Putative CTP synthase -0.81* -0.81* -0.66* VIII
MT002341 TC79766 bHLH transcription factor GBOF-1 -0.84* -0.13 0.18 VIII
MT011401 TC79757 AT3g09731 -1.03* -0.61 -0.59 VIII
MT015283 TC85653 SRG1 protein -1.12* -0.05 0.15 VIII
MT015124 AL371197 Glycine-rich RNA binding protein -1.30* -0.61 -0.28 VIII
MT011927 TC90604 Probable homeobox protein T9L24.43 -1.47 -0.11 0.22 VIII
MT012751 TC83617 Transcriptional regulator AraC family -1.69* -0.94* -1.32 VIII
MT014356 TC85808 12-oxophytodienoate reductase (OPR2) 1.27* 1.06* 0.03 X
MT014354 TC85808 12-oxophytodienoate reductase (OPR2) 1.19* 0.71 -0.25 X
MT011343 TC80935 Receptor protein-like 1.15* 0.88* 0.03 X
MT011648 TC91194 Putative wall associated serine/theorine kinase 0.81* -0.01 0.39 X
MT002252 TC87949 Calcium/calmodulin-dependent protein kinase CaMK2 0.06 -0.20 -0.91* X
MT002729 TC89621 At2g23450 0.04 -0.18 -1.07* X
MT009158 TC88304 F12A21.14 -0.10 -1.28* -0.40 X
MT014753 TC90240 Ser/Thr kinase -0.15 0.48 -1.38* X
MT013890 TC88105 Putative protein kinase -0.23 -0.17 -0.98* X
MT008763 TC79044 Protein kinase -0.40 0.44 -1.00* X
MT010193 TC80761 RAB1Y -0.73 -2.25* -0.76 X
MT015663 TC88029 Signal peptidase -0.83* -0.80 -0.47 X
MT008494 TC78698 Signal recognition particle 54 kDa subunit precursor -0.88* -0.58 -1.13* X
MT009940 BI263421 Mitogen-activated protein kinase -1.39* -0.87* -1.12* X
MT012718 TC83265 Guanylate kinase -1.85* -0.22 -0.29 X
MT010223 TC90306 At1g21410 -1.86* 0.13 0.77 X
MT014704 TC80412 Peroxidase 3.61* 3.08* 1.56* XIIA
MT001261 TC87286 Nine-cis-epoxycarotenoid dioxygenase4 2.06* 1.68* -0.05 XIIA
MT015019 TC93000 Bacterial-induced peroxidase precursor 1.97* 1.32* 1.02* XIIA
MT014726 TC79559 Glutathione S-transferase 1.96* 2.08* - XIIA
MT008551 TC78940 Cationic peroxidase 2 precursor 1.77* 1.20* -0.28 XIIA
MT012181 C89099 Lipid transfer protein SDi-9 drought-induced 1.60* 1.20* 1.23* XIIA
MT008366 TC78224 Bacterial-induced peroxidase precursor 1.50* 1.77* 0.98* XIIA
MT000911 TC76930 Syringolide-induced protein B13-1-9 1.38* 1.13* 1.00* XIIA
MT006316 TC82368 Disease resistance response protein 39 precursor 1.29* 1.49* 1.13* XIIA
MT006497 TC93816 ABC transporter 1.29* 1.24* 1.10* XIIA
MT006999 TC85204 Peroxidase1A 1.28* 1.60* 1.81* XIIA
MT007682 TC77455 Nine-cis-epoxycarotenoid dioxygenase1 1.12* 1.09* 0.88* XIIA
MT015903 TC82203 Peroxidase 1.01* 0.76 0.39 XIIA
MT015524 TC77937 CjMDR1 0.98* 0.61 0.15 XIIA
MT014728 TC78224 Bacterial-induced peroxidase precursor 0.91* 0.69 0.33 XIIA
MT015980 TC82138 Probable glutathione S-transferase 0.86* 0.71 0.36 XIIA
MT009791 TC86798 Cyanogenic Beta-Glucosidase Molid 1 0.80* 0.14 -0.24 XIIA
MT015051 TC85153 Peroxidase precursor 0.48 0.98* 1.11* XIIA
MT015067 TC85170 Peroxidase 0.37 0.85* 1.17* XIIA
MT014072 TC77400 Beta-1 3-glucanase 0.13 0.41 -1.35* XIIA
MT007613 TC86304 GA protein 0.10 0.10 -2.28* XIIA
MT014080 TC85172 Peroxidase 3 0.04 0.96* 0.01 XIIA
MT015763 TC81227 Elicitor inducible gene product Nt-SubE80 0.03 -0.16 -0.87* XIIA
MT015058 TC85182 Peroxidase -0.35 0.65 -1.17* XIIA
MT006425 MT006425 Disease resistance protein-like -0.39 -0.01 0.89* XIIA
MT014328 TC85843 5-epi-aristolochene synthase -0.44 -0.11 0.81* XIIA
MT014169 TC76642 Pprg2 protein -0.72 -1.04* -0.38 XIIA
MT008899 TC79452 TIR-similar-domain-containing protein TSDC -0.79 -1.10* -1.62* XIIA
MT003218 TC90010 Putative NBS-LRR type disease resistance protein -0.84* -0.65 -0.94* XIIA
MT000053 BM813626 Ascorbate peroxidase -0.90* -0.78 -0.42 XIIA
MT011658 TC82236 Putative resistance protein -1.18* -0.68 -3.38* XIIA
MT015567 TC78525 Syringolide-induced protein 19-1-5 -1.32* -0.81* -0.39 XIIA
MT000707 TC86358 6a-hydroxymaackiain methyltransferase -2.13* -1.98* -1.71* XIIA
MT015446 TC77584 Epoxide hydrolase homolog -3.48 -0.40 -1.21* XIIA
MT015286 TC85739 Ripening-related protein-like 1.66* 0.84* -0.16 XIIB
MT015373 TC85963 CIC protein cold-inducible 1.65* 0.98* 1.00* XIIB
MT003152 TC88482 Auxin influx carrier protein 1.50* 1.19* 1.17* XIIB
MT009872 TC80360 Probable wound-induced protein T9A4.6 0.94* 0.62 -0.09 XIIB
MT012817 TC91709 LHY protein 0.09 0.81* -0.70 XIIB
MT001051 TC78061 Auxin-induced protein 0.68 0.63 -0.87* XIIB
MT013626 TC82806 GMFP7 -0.70 -0.43 -0.83* XIIB
MT014513 TC78341 Embryo-specific protein-like -1.08* -0.10 -0.54 XIIB
MT001024 TC79562 Putative 16.9 kDa heat shock protein -1.12* -0.22 -1.04* XIIB
  1. a Oligo ID, identifier of M. truncatula 70-mer oligonucleotides
  2. b TIGR ID, identifier in the TIGR M. truncatula Gene Index;
  3. c M = log2 expression ratio P665/Messire at 16, 24 and 48 hours after inoculation
  4. * M ≤ -0.8 or M ≥ 0.8 are significant at significance level of 0.05 using t-test and FDR correction
  5. Genes of the functional categories (FC): I (Cell wall), VI (Secondary metabolism and hormone metabolism), VIII (Gene expression and RNA metabolism), X (Signal transduction and post-translational regulation), XIIA (Defense and cell rescue) and XIIB (Abiotic stimuli and development) differentially expressed in P665 compared to Messire after inoculation with M. pinodes.