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Table 1 Most relevant genes differentially expressed in P665 compared to Messire after inoculation with M. pinodes

From: Identification of genes differentially expressed in a resistant reaction to Mycosphaerella pinodes in pea using microarray technology

Oligo IDa

TIGR IDb

Annotation

M16c

M24

M48

FC

MT015143

BG584806

Repetitive proline-rich cell wall protein 2 precursor

1.39*

1.04*

1.30*

I

MT015121

BG586912

Repetitive proline-rich cell wall protein 1 precursor

1.22*

0.69

1.05*

I

MT002297

TC79657

Nodulin-like protein

1.19*

0.86*

0.86*

I

MT005666

TC83381

Caffeic acid O-methyltransferase

0.17

0.22

0.88*

I

MT004103

TC82015

Beta-galactosidase

0.03

-0.08

-1.13*

I

MT014461

TC86053

Beta-galactosidase

-0.18

-0.40

-1.23*

I

MT013510

TC91374

Probable xyloglucan endotransglycosylase

-0.44

-1.08*

-0.61

I

MT006437

TC77501

Endoxyloglucan transferase

-0.71

0.12

-1.42

I

MT014283

TC85611

Caffeoyl-CoA O-methyltransferase

-0.87*

-0.12

-1.55*

I

MT014301

TC76880

Endoxyloglucan transferase

-0.90*

0.08

-0.51

I

MT014287

TC76828

Extensin-like protein

-1.00*

0.12

-0.43

I

MT001416

TC78670

Expansin

-1.01*

0.31

0.19

I

MT014300

BQ136812

Xyloglucan endotransglycosylase

-1.05*

0.15

-0.82*

I

MT015434

TC86491

Expansin

-1.09*

-0.44

-1.21*

I

MT009043

TC78936

Protein T10O24.17

-1.14*

-1.38*

-1.06*

I

MT007149

TC76727

Putative proline-rich protein APG isolog

-1.49*

-0.81*

-0.45

I

MT015061

TC85201

Lipoxygenase

1.42*

0.88*

0.44

VI

MT013322

TC93346

Peroxisomal copper-containing amine oxidase

0.99*

0.27

0.02

VI

MT006064

TC91378

AT3g62110

0.95*

0.85*

0.67

VI

MT000596

TC86308

Cytochrome P450 78A3

0.74

-0.71

-1.90*

VI

MT005593

TC83534

Putative amine oxidase

0.57

-0.14

1.46*

VI

MT001070

TC78077

UDP-glycose flavonoid glycosyltransferase

0.57

0.85*

0.20

VI

MT006134

TC81027

4-coumarate--CoA ligase-like protein

0.38

1.37*

0.1

VI

MT006994

TC85176

Lipoxygenase

0.32

0.25

-1.54*

VI

MT000200

TC85619

Probable lipoxygenase

0.17

0.07

0.86*

VI

MT000193

TC85559

Acetyl-CoA carboxylase

0.13

1.34*

0.06

VI

MT000333

TC85502

Phenylalanine ammonia-lyase

0.06

1.32*

-0.44

VI

MT013671

TC84229

Cytochrome p450

0.06

-0.66

-0.87*

VI

MT012159

TC83702

Squalene monooxygenase

0.05

0.94*

-0.47

VI

MT003115

TC89052

Cytochrome P-450LXXIA1 (cyp71A1)

0.05

0.21

1.23*

VI

MT001043

TC77410

Flavanone 3 beta-hydroxylase

0.02

0.15

1.49*

VI

MT002497

TC88443

Hyoscyamine 6 beta-hydroxylase

-0.13

0.53

0.96*

VI

MT009587

TC78460

Flavonol synthase-like protein

-0.81*

-0.42

-0.47

VI

MT003010

TC89135

Cytochrome P450 71A21

-1.06*

-2.15*

-0.37

VI

MT014118

TC85168

Lipoxygenase

-1.48*

-1.73*

0.24

VI

MT002785

TC80364

Tropinone reductase homolog

-1.32*

-1.40*

-1.53*

VI

MT012682

TC80051

Amygdalin hydrolase isoform AH I precursor

-1.39*

-0.48

-0.45

VI

MT001339

TC87447

NAC domain protein NAC1

1.26*

1.11*

0.28

VIII

MT009598

TC79845

Ethylene responsive element binding factor-like

1.09*

1.43*

0.39

VIII

MT008649

TC87796

EBNA-1 nuclear protein

1.06*

1.00*

0.60

VIII

MT005976

TC93710

Promoter-binding factor-like protein

1.03*

0.91*

0.80

VIII

MT000362

TC77110

Putative steroid membrane binding protein

1.01*

1.01*

1.17*

VIII

MT016167

BI262875

GRAS family transcription factor

0.90*

0.66

0.13

VIII

MT015261

TC76796

Transcription factor JERF1

0.89*

0.97*

0.29

VIII

MT016157

BE319790

Pathogenesis related transcriptional factor and ERF

0.88*

0.02

-0.29

VIII

MT002827

TC80713

Probable cysteinyl-tRNA synthetase

0.86*

0.83*

0.38

VIII

MT008661

TC87393

Probable CCCH-type zinc finger protein

0.85*

0.24

-0.27

VIII

MT016437

AJ848040

Probable C2H2 type zinc finger protein ID1 like

0.33

0.86*

-0.13

VIII

MT011589

TC87048

F5M15.3

-0.07

-1.13*

-1.98*

VIII

MT008378

TC87360

Chromosome chr7 scaffold_31 whole genome shotgun sequence

-0.19

-0.15

-0.83*

VIII

MT008731

TC78273

Putative transcription factor APFI

-0.31

-0.88*

-0.13

VIII

MT015990

TC76565

AT3g16857

-0.40

-1.41*

-0.50

VIII

MT013325

TC84058

GATA-binding transcription factor-like protein

-0.52

-0.39

-1.09*

VIII

MT009202

TC77895

AT4g00150

-0.58

0.48

1.51*

VIII

MT011704

TC91195

Putative CTP synthase

-0.81*

-0.81*

-0.66*

VIII

MT002341

TC79766

bHLH transcription factor GBOF-1

-0.84*

-0.13

0.18

VIII

MT011401

TC79757

AT3g09731

-1.03*

-0.61

-0.59

VIII

MT015283

TC85653

SRG1 protein

-1.12*

-0.05

0.15

VIII

MT015124

AL371197

Glycine-rich RNA binding protein

-1.30*

-0.61

-0.28

VIII

MT011927

TC90604

Probable homeobox protein T9L24.43

-1.47

-0.11

0.22

VIII

MT012751

TC83617

Transcriptional regulator AraC family

-1.69*

-0.94*

-1.32

VIII

MT014356

TC85808

12-oxophytodienoate reductase (OPR2)

1.27*

1.06*

0.03

X

MT014354

TC85808

12-oxophytodienoate reductase (OPR2)

1.19*

0.71

-0.25

X

MT011343

TC80935

Receptor protein-like

1.15*

0.88*

0.03

X

MT011648

TC91194

Putative wall associated serine/theorine kinase

0.81*

-0.01

0.39

X

MT002252

TC87949

Calcium/calmodulin-dependent protein kinase CaMK2

0.06

-0.20

-0.91*

X

MT002729

TC89621

At2g23450

0.04

-0.18

-1.07*

X

MT009158

TC88304

F12A21.14

-0.10

-1.28*

-0.40

X

MT014753

TC90240

Ser/Thr kinase

-0.15

0.48

-1.38*

X

MT013890

TC88105

Putative protein kinase

-0.23

-0.17

-0.98*

X

MT008763

TC79044

Protein kinase

-0.40

0.44

-1.00*

X

MT010193

TC80761

RAB1Y

-0.73

-2.25*

-0.76

X

MT015663

TC88029

Signal peptidase

-0.83*

-0.80

-0.47

X

MT008494

TC78698

Signal recognition particle 54 kDa subunit precursor

-0.88*

-0.58

-1.13*

X

MT009940

BI263421

Mitogen-activated protein kinase

-1.39*

-0.87*

-1.12*

X

MT012718

TC83265

Guanylate kinase

-1.85*

-0.22

-0.29

X

MT010223

TC90306

At1g21410

-1.86*

0.13

0.77

X

MT014704

TC80412

Peroxidase

3.61*

3.08*

1.56*

XIIA

MT001261

TC87286

Nine-cis-epoxycarotenoid dioxygenase4

2.06*

1.68*

-0.05

XIIA

MT015019

TC93000

Bacterial-induced peroxidase precursor

1.97*

1.32*

1.02*

XIIA

MT014726

TC79559

Glutathione S-transferase

1.96*

2.08*

-

XIIA

MT008551

TC78940

Cationic peroxidase 2 precursor

1.77*

1.20*

-0.28

XIIA

MT012181

C89099

Lipid transfer protein SDi-9 drought-induced

1.60*

1.20*

1.23*

XIIA

MT008366

TC78224

Bacterial-induced peroxidase precursor

1.50*

1.77*

0.98*

XIIA

MT000911

TC76930

Syringolide-induced protein B13-1-9

1.38*

1.13*

1.00*

XIIA

MT006316

TC82368

Disease resistance response protein 39 precursor

1.29*

1.49*

1.13*

XIIA

MT006497

TC93816

ABC transporter

1.29*

1.24*

1.10*

XIIA

MT006999

TC85204

Peroxidase1A

1.28*

1.60*

1.81*

XIIA

MT007682

TC77455

Nine-cis-epoxycarotenoid dioxygenase1

1.12*

1.09*

0.88*

XIIA

MT015903

TC82203

Peroxidase

1.01*

0.76

0.39

XIIA

MT015524

TC77937

CjMDR1

0.98*

0.61

0.15

XIIA

MT014728

TC78224

Bacterial-induced peroxidase precursor

0.91*

0.69

0.33

XIIA

MT015980

TC82138

Probable glutathione S-transferase

0.86*

0.71

0.36

XIIA

MT009791

TC86798

Cyanogenic Beta-Glucosidase Molid 1

0.80*

0.14

-0.24

XIIA

MT015051

TC85153

Peroxidase precursor

0.48

0.98*

1.11*

XIIA

MT015067

TC85170

Peroxidase

0.37

0.85*

1.17*

XIIA

MT014072

TC77400

Beta-1 3-glucanase

0.13

0.41

-1.35*

XIIA

MT007613

TC86304

GA protein

0.10

0.10

-2.28*

XIIA

MT014080

TC85172

Peroxidase 3

0.04

0.96*

0.01

XIIA

MT015763

TC81227

Elicitor inducible gene product Nt-SubE80

0.03

-0.16

-0.87*

XIIA

MT015058

TC85182

Peroxidase

-0.35

0.65

-1.17*

XIIA

MT006425

MT006425

Disease resistance protein-like

-0.39

-0.01

0.89*

XIIA

MT014328

TC85843

5-epi-aristolochene synthase

-0.44

-0.11

0.81*

XIIA

MT014169

TC76642

Pprg2 protein

-0.72

-1.04*

-0.38

XIIA

MT008899

TC79452

TIR-similar-domain-containing protein TSDC

-0.79

-1.10*

-1.62*

XIIA

MT003218

TC90010

Putative NBS-LRR type disease resistance protein

-0.84*

-0.65

-0.94*

XIIA

MT000053

BM813626

Ascorbate peroxidase

-0.90*

-0.78

-0.42

XIIA

MT011658

TC82236

Putative resistance protein

-1.18*

-0.68

-3.38*

XIIA

MT015567

TC78525

Syringolide-induced protein 19-1-5

-1.32*

-0.81*

-0.39

XIIA

MT000707

TC86358

6a-hydroxymaackiain methyltransferase

-2.13*

-1.98*

-1.71*

XIIA

MT015446

TC77584

Epoxide hydrolase homolog

-3.48

-0.40

-1.21*

XIIA

MT015286

TC85739

Ripening-related protein-like

1.66*

0.84*

-0.16

XIIB

MT015373

TC85963

CIC protein cold-inducible

1.65*

0.98*

1.00*

XIIB

MT003152

TC88482

Auxin influx carrier protein

1.50*

1.19*

1.17*

XIIB

MT009872

TC80360

Probable wound-induced protein T9A4.6

0.94*

0.62

-0.09

XIIB

MT012817

TC91709

LHY protein

0.09

0.81*

-0.70

XIIB

MT001051

TC78061

Auxin-induced protein

0.68

0.63

-0.87*

XIIB

MT013626

TC82806

GMFP7

-0.70

-0.43

-0.83*

XIIB

MT014513

TC78341

Embryo-specific protein-like

-1.08*

-0.10

-0.54

XIIB

MT001024

TC79562

Putative 16.9 kDa heat shock protein

-1.12*

-0.22

-1.04*

XIIB

  1. a Oligo ID, identifier of M. truncatula 70-mer oligonucleotides
  2. b TIGR ID, identifier in the TIGR M. truncatula Gene Index;
  3. c M = log2 expression ratio P665/Messire at 16, 24 and 48 hours after inoculation
  4. * M ≤ -0.8 or M ≥ 0.8 are significant at significance level of 0.05 using t-test and FDR correction
  5. Genes of the functional categories (FC): I (Cell wall), VI (Secondary metabolism and hormone metabolism), VIII (Gene expression and RNA metabolism), X (Signal transduction and post-translational regulation), XIIA (Defense and cell rescue) and XIIB (Abiotic stimuli and development) differentially expressed in P665 compared to Messire after inoculation with M. pinodes.