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Table 3 Summary of blast searches between 95,979 great tit contigs and other avian sequence databases

From: Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

zebra finch database

 

whole genome

cDNA

protein

contigs

93,221 (97%)

33,574 (35%)

29,830 (31%)

mean% similarity

90

95

90

mean coverage depth of contigs

12

17

17

unique hits

76,708

10,085

9,732

chicken database

 

whole genome

cDNA

protein

contigs

64,262 (67%)

34,844 (36%)

30,423 (32%)

mean% similarity

89

90

85

mean coverage depth of contigs

14

17

17

unique hits

51,161

10,943

10,480

  1. The number of unique sequences in the zebra finch/chicken database (genome, cDNA or protein) that matched contigs ("unique hits") are also shown. Genomic DNA hits were not classified as unique if they were located less than 100 bases from any other hit