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Table 2 Distribution of mycelia small RNAs with perfect map to nuclear and mitochondria genomes.

From: Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

  Alignmenta Read Countb Proratedc Featuresd
  Total Sense Antisense Total Sense Antisense Total Sense Antisense Mapped Total Coverage
Genome 386741 211969 158036 32518 28592 6657 31985 26267 3569 3448 14880 23%
Genes 41318 23046 20923 8459 6213 5095 4226 2522 1704 1156 11043 10%
   Introns 5396 3577 1821 1890 1848 263 209 191 17 121 19651 1%
   Exons 36860 20202 19302 8270 5702 5075 4017 2331 1686 1200 30705 4%
5' UTRe 11416 5020 6505 4907 3147 3204 2103 971 1132 223 11241 2%
EST Supp. 3337 1715 1729 1151 502 844 691 100 590 83 2558 3%
Unsupp. 8079 3306 4777 3955 2760 2496 1412 870 542 151 8683 2%
CDS 4111 2959 1154 2463 2170 422 887 800 87 720 30486 2%
EST Supp. 2607 1636 973 1177 930 354 686 628 58 561 18154 3%
Unsupp. 1504 1324 182 1406 1302 136 201 172 29 159 12332 1%
3' UTR 23571 13686 12378 4347 3253 3342 1027 560 467 342 11076 3%
EST Supp. 3609 1882 1777 662 603 315 218 170 48 156 2551 6%
Unsupp. 19962 11805 10602 3921 2870 3243 810 390 419 198 8525 2%
tRNAf 30934 25184 5752 5555 5468 89 4018 3983 35 338 341 99%
   5' Leader 2020 1975 47 1494 1452 44 375 375 0 112 341 33%
   Mature 19615 19336 281 4243 4241 4 3137 3134 2 338 341 99%
   3' Term 12937 7510 5429 1841 1799 44 506 474 32 209 341 61%
rRNA 67781 67765 18 19559 19550 11 18197 18188 9 48 48 100%
   5.8 S 1630 1630 1 950 950 1 950 950 0 3 3 100%
   8 S 36761 36761 1 1141 1141 1 804 804 0 41 41 100%
   18 S 5185 5183 4 5185 5183 4 4242 4240 2 2 2 100%
   28 S 24205 24192 15 12283 12277 8 12201 12194 7 2 2 100%
snRNA 162 162 1 129 129 1 90 90 0 8 14 57%
Transposable Elements 248528 113951 134620 3369 1522 1883 3305 1484 1821 1898 3448 55%
Intergenic 35342 - - 4175 - - 2150 - - - - -
Mitochondria 1448 1423 13 1445 1422 13 912 886 10 36 37 97%
   Genes 961 950 13 961 950 13 216 206 10 15 15 100%
CDS 17 17 1 17 17 1 16 16 0 7 16 44%
   tRNA 1074 1074 1 1073 1073 1 464 464 0 18 20 90%
Mature 346 346 1 345 345 1 107 107 0 18 20 90%
   rRNA 314 314 1 314 314 1 216 216 0 2 2 100%
Intergenic 18 - - 18 - - 16 - - - - -
  1. a Alignment refers to the summation of small RNA alignments to any genomic feature.
  2. b Read Count represents the summation of distinct reads mapping to a given feature. Noteworthy the values for each genome feature are generally less than the sum of its sub-features due to the small RNAs mapping to multiple features (See "Material and Methods" for more details).
  3. c Prorated apportions the weight of any small RNA between alignments and features.
  4. d Features represent the proportion of genomic features mapped by small RNAs where mapped indicates the number of members for each genomic feature mapped by small RNAs among the total possible.
  5. e Values indicate number of small RNAs that mapped to sub-features within gene models that are supported by ESTs (EST Supp.) or have no EST supporting evidence (Unsupp.)
  6. f tRNA entries include pseudo-tRNAs.