Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

BMC Genomics

Table 3 Distribution of appressoria small RNAs with perfect map to nuclear and mitochondria genomes.

	Alignment^a			Read Count^b			Prorated^c			Features^d
	Total	Sense	Antisense	Total	Sense	Antisense	Total	Sense	Antisense	Mapped	Total	Coverage
Genome	27149	22116	6630	6352	6145	1311	6341	5768	361	1590	14880	11%
Genes	5117	2699	2846	2106	1633	1279	831	504	327	331	11043	3%
Introns	211	197	16	188	187	6	12	12	0	23	19651	0%
Exons	4965	2553	2840	2097	1545	1279	819	492	327	319	30705	1%
5' UTR^e	1717	754	968	1220	737	678	398	226	172	70	11241	1%
EST Supp.	196	101	99	168	99	73	92	29	63	27	2558	1%
Unsupp.	1521	654	870	1057	641	606	306	197	109	45	8683	1%
CDS	307	256	53	278	255	27	165	146	19	160	30486	1%
EST Supp.	160	125	37	134	125	13	121	116	6	124	18154	1%
Unsupp.	147	132	17	147	132	17	44	31	13	36	12332	0%
3' UTR	3244	1687	1979	1193	882	928	256	119	136	101	11076	1%
EST Supp.	45	36	13	21	20	7	10	8	2	24	2551	1%
Unsupp.	3199	1652	1967	1174	865	924	246	112	134	78	8525	1%
tRNA^f	8732	8459	275	1984	1983	3	1629	1627	2	317	341	93%
5' Leader	290	290	1	112	112	1	30	30	0	14	341	4%
Mature	8437	8437	1	1961	1961	1	1534	1534	0	177	341	52%
3' Term	957	684	275	398	397	3	65	63	2	168	341	49%
rRNA	9777	9775	4	3802	3801	3	3603	3601	2	47	48	98%
5.8 S	427	427	1	355	355	1	355	355	0	3	3	100%
8 S	3446	3446	1	99	99	1	70	70	0	41	41	100%
18 S	649	649	2	649	649	2	509	508	1	1	2	50%
28 S	5255	5254	3	2699	2699	2	2670	2669	1	2	2	100%
snRNA	7	7	1	5	5	1	3	3	0	4	14	29%
Transposable Elements	7046	3470	3578	71	34	39	63	33	30	891	3448	26%
Intergenic	1112	-	-	438	-	-	212	-	-	-	-	-
Mitochondria	39	38	2	39	38	2	29	27	1	23	37	62%
Genes	17	17	2	17	17	2	7	6	1	8	15	53%
CDS	2	2	1	2	2	1	1	1	0	2	16	13%
tRNA	17	17	1	17	17	1	8	8	0	13	20	65%
Mature	11	11	1	11	11	1	4	4	0	6	20	30%
rRNA	18	18	1	18	18	1	14	14	0	2	2	100%
Intergenic	1	-	-	1	-	-	1	-	-	-	-	-

^a Alignment refers to the summation of small RNA alignments to any genomic feature.
^b Read Count represents the summation of distinct reads mapping to a given feature. Noteworthy the values for each genome feature are generally less than the sum of its sub-features due to the small RNAs mapping to multiple features (See "Material and Methods" for more details).
^c Prorated apportions the weight of any small RNA between alignments and features.
^d Features represent the proportion of genomic features mapped by small RNAs where mapped indicates the number of members for each genomic feature mapped by small RNAs among the total possible.
^e Values indicate number of small RNAs that mapped to sub-features within gene models that are supported by ESTs (EST Supp.) or have no EST supporting evidence (Unsupp.).
^f tRNA entries include pseudo-tRNAs.

ISSN: 1471-2164