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Table 3 Distribution of appressoria small RNAs with perfect map to nuclear and mitochondria genomes.

From: Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

  Alignmenta Read Countb Proratedc Featuresd
  Total Sense Antisense Total Sense Antisense Total Sense Antisense Mapped Total Coverage
Genome 27149 22116 6630 6352 6145 1311 6341 5768 361 1590 14880 11%
Genes 5117 2699 2846 2106 1633 1279 831 504 327 331 11043 3%
   Introns 211 197 16 188 187 6 12 12 0 23 19651 0%
   Exons 4965 2553 2840 2097 1545 1279 819 492 327 319 30705 1%
5' UTRe 1717 754 968 1220 737 678 398 226 172 70 11241 1%
EST Supp. 196 101 99 168 99 73 92 29 63 27 2558 1%
Unsupp. 1521 654 870 1057 641 606 306 197 109 45 8683 1%
CDS 307 256 53 278 255 27 165 146 19 160 30486 1%
EST Supp. 160 125 37 134 125 13 121 116 6 124 18154 1%
Unsupp. 147 132 17 147 132 17 44 31 13 36 12332 0%
3' UTR 3244 1687 1979 1193 882 928 256 119 136 101 11076 1%
EST Supp. 45 36 13 21 20 7 10 8 2 24 2551 1%
Unsupp. 3199 1652 1967 1174 865 924 246 112 134 78 8525 1%
tRNAf 8732 8459 275 1984 1983 3 1629 1627 2 317 341 93%
   5' Leader 290 290 1 112 112 1 30 30 0 14 341 4%
   Mature 8437 8437 1 1961 1961 1 1534 1534 0 177 341 52%
   3' Term 957 684 275 398 397 3 65 63 2 168 341 49%
rRNA 9777 9775 4 3802 3801 3 3603 3601 2 47 48 98%
   5.8 S 427 427 1 355 355 1 355 355 0 3 3 100%
   8 S 3446 3446 1 99 99 1 70 70 0 41 41 100%
   18 S 649 649 2 649 649 2 509 508 1 1 2 50%
   28 S 5255 5254 3 2699 2699 2 2670 2669 1 2 2 100%
snRNA 7 7 1 5 5 1 3 3 0 4 14 29%
Transposable Elements 7046 3470 3578 71 34 39 63 33 30 891 3448 26%
Intergenic 1112 - - 438 - - 212 - - - - -
Mitochondria 39 38 2 39 38 2 29 27 1 23 37 62%
   Genes 17 17 2 17 17 2 7 6 1 8 15 53%
CDS 2 2 1 2 2 1 1 1 0 2 16 13%
   tRNA 17 17 1 17 17 1 8 8 0 13 20 65%
Mature 11 11 1 11 11 1 4 4 0 6 20 30%
   rRNA 18 18 1 18 18 1 14 14 0 2 2 100%
   Intergenic 1 - - 1 - - 1 - - - - -
  1. a Alignment refers to the summation of small RNA alignments to any genomic feature.
  2. b Read Count represents the summation of distinct reads mapping to a given feature. Noteworthy the values for each genome feature are generally less than the sum of its sub-features due to the small RNAs mapping to multiple features (See "Material and Methods" for more details).
  3. c Prorated apportions the weight of any small RNA between alignments and features.
  4. d Features represent the proportion of genomic features mapped by small RNAs where mapped indicates the number of members for each genomic feature mapped by small RNAs among the total possible.
  5. e Values indicate number of small RNAs that mapped to sub-features within gene models that are supported by ESTs (EST Supp.) or have no EST supporting evidence (Unsupp.).
  6. f tRNA entries include pseudo-tRNAs.