Table 3 Classification and distribution of known plant repeats in the BAC end sequences
Class | Number of elements | % of nucleotides | Length (bp) |
|---|---|---|---|
Retroelements | 2196 | 5.51 | 662,150 |
LINEs: | 318 | 0.65 | 78,495 |
RTE/Bov-B | 18 | 0.04 | 4,649 |
L1/CIN4 | 297 | 0.61 | 73,545 |
LTR elements: | 1,878 | 4.86 | 583,655 |
Ty1/Copia | 1,155 | 3.03 | 364,184 |
Gypsy/DIRS1 | 701 | 1.8 | 216,428 |
DNA transposons | 206 | 0.37 | 43,907 |
Total interspersed repeats | - | 5.88 | 706,119 |
Small RNA | 54 | 0.1 | 12,218 |