Table 2 Variable regions in V. parahaemolyticus
From: Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
# | Region or insertion site relative to RIMD2210633 | Number of ORFs | Function | RIMD (O3:K6 1996) | Peru466 (O3:K6 1996) | AN5034 (O4:K68 1998) | K5030 (O3:K6 2005) | AQ3810(O3:K6 1983) | AQ4037(O3:K6 1985) |
|---|---|---|---|---|---|---|---|---|---|
1 | Between VP0001-0002 (K5030_3039-3061) | 23 | DNA sulfur modification proteins | - | - | - | + | - | - |
2 | VP0197-0238 | 42 | O3:K6 LPS/CPS | + | + | - | + | + | + |
3 | Replaced VP0197-0238 (AN5034_1849-1901) | 53 | O4:K68 LPS/CPS | - | - | + | - | - | - |
4 | Between VP0248-0249 (AN5034_1830-1837) | 8 | Unknown | - | - | + | - | - | - |
5 | VP0380-0403 | 24 | Type I restriction endonuclease in tRNA-Met-1 | + | + | + | + | - | - |
6 | VP0637-0643 | 7 | Integrated element target tmRNA | + | + | + | + | - | - |
7 | Between VP0643-0644 (AN5034_1437-1442) | 6 | Integrated element target tmRNA | - | + | + | + | + | + |
8 | VP1071-1076 | 6 | Unknown, contains phage integrase | + | + | + | + | - | - |
9 | VP1077-1087 | 11 | Unknown, contains phage integrase | + | + | + | + | + | - |
10 | VP1385-1421 | 37 | Type VI secretion system | + | + | + | + | - | + |
11 | VP1549-1562 | 14 | Phage f237 | + | + | + | + | - | - |
12 | Replaced VP1549-1562 (AQ4037_2432-2444) | 13 | Phage similar to f237 | - | - | - | - | - | + |
13 | VP1563-1586 | 24 | Phage alpha* | + | + | + | + | + | - |
14 | Between VP1604-1605 (AN5034_0425-0489) | 65 | Phage | - | - | + | - | - | - |
15 | VP1787-1865 | 78 | Super integron | + | + | + | + | v | v |
16 | Between VP1864-1865 (K5030 1808-1814) | 7 | Addition to super integron, next to integrase | - | - | - | + | - | - |
17 | VP1884-1891 | 8 | Unknown | + | + | + | + | - | - |
18 | VP1969-1974 | 6 | Fatty acid and amino acid metabolism | + | + | + | + | - | + |
19 | VP2131-2144 | 14 | Hypothetical proteins | + | + | + | + | - | - |
20 | Between VP2275-2276 (AQ4037_1749-1829) | 81 | trh pathogenicity island | - | - | - | - | - | + |
21 | Between VP2638-2639 (AQ4037_1361_1383) | 23 | Hypothetical proteins, contains integrase | - | - | - | - | - | + |
22 | VP2900-2910 | 11 | Hypothetical proteins | + | + | + | + | - | - |
23 | VPA0434-0440 | 7 | Hypothetical proteins | + | + | + | + | - | - |
24 | VPA0889-0912 | 24 | Phage beta* | + | + | + | + | + | - |
25 | VPA1254-1270 | 17 | Unknown | + | + | + | + | - | - |
26 | VPA1310-1398 | 86 | tdh pathogenicity island | + | + | + | + | + | - |
27 | Replaced VPA1310-1313 (AN5034_A0845-A0851) | 7 | Hypothetical proteins | - | + | + | + | - | - |
28 | Replaced VPA1310-1398 (AQ4037_A1228-A1253) | 25 | Nutrient uptake and metabolism | - | - | - | - | + | + |