Table 2 Potato sequence and assembly statistics.
From: Single nucleotide polymorphism discovery in elite north american potato germplasm
| Â | Sanger | GA2 | ||||
|---|---|---|---|---|---|---|
| Â | Bintje | Kennebec | Shepody | Atlantic | Snowden | Premier Russet |
Total No. sequences | 15,866 | 83,549 | 86,341 | 36,291,638 | 38,981,546 | 39,556,178 |
Total No. Gb sequences | 0.0079 | 0.0544 | 0.0543 | 2.2 | 2.4 | 2.4 |
No. sequences passed quality filters | 14,588 | 78,386 | 83,611 | 30,185,186 | 31,949,096 | 33,288,120 |
No. of Gb of sequences passed quality filters | 0.0077 | 0.0533 | 0.053 | 1.8 | 2.0 | 2.0 |
Total No. contigs & singletons | 7,510 | 25,330 | 51,459 | NA | NA | NA |
No.contigs | 2,332 | 10,318 | 10,716 | 45,214 | 58,754 | 54,917 |
No.singletons | 5,178 | 15,012 | 40,743 | NA | NA | NA |
Total No. Mb contigs & singletons | 4.27 | 19.89 | 36.33 | 29.45 | 28.55 | 28.93 |
No. Mb contigs | 1.61 | 10.6 | 8.68 | 29.45 | 28.55 | 28.93 |
No. Mb singletons | 2.66 | 9.29 | 27.65 | NA | NA | NA |
N50 contig size (bp) | 711 | 1,097 | 847 | 1,192 | 775 | 826 |
Max contig size (bp) | 2,255 | 4,081 | 2,517 | 11,317 | 7,012 | 6,675 |
Min contig size (bp) | 278 | 272 | 847 | 150 | 150 | 150 |