Skip to main content

Table 5 Pairwise comparison of SNPs between potato accessions.

From: Single nucleotide polymorphism discovery in elite north american potato germplasm

Cultivar 1

Cultivar 2

Total SNPs

Cultivar-restricted SNPs

Atlantic

Premier Russet

14,955

5,087

Atlantic

Snowden

17,531

7,570

Atlantic

Bintje

192

40

Atlantic

Shepody

506

128

Atlantic

Kennebec

1,459

388

Premier Russet

Snowden

18,537

8,365

Premier Russet

Bintje

212

42

Premier Russet

Shepody

535

106

Premier Russet

Kennebec

1,689

424

Snowden

Bintje

215

31

Snowden

Shepody

567

121

Snowden

Kennebec

1,665

349

Bintje

Shepody

136

31

Bintje

Kennebec

329

141

Shepody

Kennebec

566

276

  1. Pairwise comparision of SNPs across the six potato cultivars. Cultivar-restricted SNPs are SNPs found exclusively in the two cultivars based on alignment to the reference genome.