Table 1 Bioinformatically validated SNPs
From: Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta)
17573 Sanger | 17573 SOLiD | r1766 | r02120 | Sub-species comparison | MamuSNP | ENCODE | dbSNP | |
|---|---|---|---|---|---|---|---|---|
17573 Sanger | ||||||||
17573 SOLiD | 1,056,266 | |||||||
r1766 | 22,665 | 412,920 | ||||||
r02120 | 5,734 | 103,323 | 328,910 | |||||
Sub-species comparison | 4,185 | 6,519 | 1,070 | 226 | ||||
MamuSNP | 389 | 781 | 159 | 33 | 19 | |||
ENCODE | 29 | 76 | 14 | 7 | 0 | 1 | ||
dbSNP | 11 | 12 | 5 | 0 | 0 | 0 | 0 | |
egeno.assembly.hets | -- | 421,234 | 64,584 | 41,607 | 34,339 | -- | -- | -- |
egeno.17573.SOLiD | -- | -- | 109,485 | 61,941 | 9 | -- | -- | -- |
egeno.r1766.frag | -- | 155,454 | -- | 93,016 | 17 | -- | -- | -- |
egeno.r02120.frag | -- | 41,836 | 69,424 | -- | 3 | -- | -- | -- |
egeno.sub-species comp | -- | 677 | 743 | 443 | -- | -- | -- | -- |