Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta)

BMC Genomics

Table 3 Data sources

Chemistry	Name	DNA source	SNP calling software	References
Sanger	Assembly	Animal 17573 ♀	SNPdetector	Gibbs, et al. (2007) [23], Wheeler (pers. comm.)
Sanger	ENCODE	47 pooled individuals	SNPdetector	Hernandez, et al. (2007) [24]
SOLiD	17573 fragment	Animal 17573 ♀	Corona_lite
SOLiD	17573 mate-pair	Animal 17573 ♀	Corona_lite
SOLiD	r1766	Animal r1766 ♀	Corona_lite
SOLiD	r02120	Animal r02120 ♂	Corona_lite
454	Sub-species comparison	16 pooled individuals	AtlasSNP	Gibbs, et al. (2007) [23]
454	MamuSNP	~7 pooled individuals	Unknown	Malhi, et al. (2007) [25], http://mamusnp.ucdavis.edu/query.php[44]
unknown	dbSNP/MonkeySNP	Unknown, >30 estimated	Unknown	http://monkeysnp.ohsu.edu/snp/[45], http://www.ncbi.nlm.nih.gov/projects/SNP/[16]

Each data source is displayed with the appropriate chemistry used, DNA source (if known) and SNP calling software.

ISSN: 1471-2164