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Table 2 Prevalence of fimbrial operons among the IBD isolatesc

From: Comparative genomics of Escherichia coli isolated from patients with inflammatory bowel disease

 

UC (5)a

CD (8)a

MG1655

LF82

CFT073b

sfm

4

4

-

-

+

ybg

0

2

+

+

-

ycb

0

0

+

-

-

yra

0

3

+

-

-

glt/yhc

0

2

+

-

-

yad

2

1

-

+

+

yag, matB

5

8

+

+

+

sfa/foc operon

2

0

-

-

+

F9, yde

3

4

-

+

+

yeh

5

7

+

+

+

yfc

4

4

-

+

+

pap

1

4

-

-

+

ygi

2

4

-

+

+

auf

4

3

-

+

+

fim operon

5

6

+

+

+

pix

0

0

-

-

-

CS1

1

2

-

-

-

F17-like fimbriae

2

0

-

-

-

CS12-like fimbriae

0

0

-

-

-

lpf/lpf2

0

0

-

+

-

bfp

0

0

-

-

-

  1. a () total number of isolates included in the analysis
  2. b Same results were obtained by both CGH analysis and genome sequence inspection
  3. c Present/ absent calls are based on the entire fimbrial operons. Some fimbriae may however still be functional even in the absence of some fimbrial genes.
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BMC Genomics

ISSN: 1471-2164

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