Table 1 Genome wide summary of marker statistics for the breeds used in LD based analysis (data set I)
Breed | SNP (n)1 | MAF (%) | ObsHET (%) | Inter-marker distance (kb) | Max gap (kb) |
|---|---|---|---|---|---|
Holstein | 39474 | 28.2 ± 13 | 37.2 ± 12 | 64.45 ± 62.5 | 2081.4 |
Brown Swiss | 35226 | 27.7 ± 13 | 36.6 ± 13 | 72.26 ± 72.8 | 2081.4 |
Simmental | 37976 | 27.5 ± 13 | 37.0 ± 12 | 67.06 ± 69.8 | 2145.7 |
Australian Angus | 44938 | 24.3 ± 15 | 32.3 ± 16 | 56.70 ± 52.4 | 2081.5 |
Brahman | 45173 | 16.4 ± 14 | 23.7 ± 17 | 56.40 ± 51.3 | 1677.8 |
Belmond Red | 47416 | 24.1 ± 15 | 32.3 ± 16 | 53.74 ± 47.9 | 1677.8 |
Hereford | 45322 | 25.5 ± 15 | 34.1 ± 16 | 56.22 ± 52.1 | 2081.5 |
Murray Gray | 41369 | 24.4 ± 15 | 33.3 ± 17 | 61.52 ± 59.0 | 2081.5 |
Santa Gertrudis | 46809 | 23.6 ± 15 | 31.7 ± 17 | 54.44 ± 48.9 | 1677.8 |
Shorthorns | 42280 | 21.7 ± 15 | 28.5 ± 16 | 60.26 ± 56.9 | 2081.5 |