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Table 3 Candidate genes reported in the identified MQTL region.

From: Meta-analysis of grain yield QTL identified during agricultural drought in grasses showed consensus

S. no. MQTL Candidate genes (no. within MQTL) Candidate genes Candidate genes (no. in total)
1 MQTL1.1 1 Calcineurin-related phosphoesterase-like 14
2   2 ERECTA-like kinase 1-like 35
3   3 Putative ankyrin-kinase 69
4   4 Putative NAC transcription factor 135
5   5 Putative pectin acetylesterase precursor 139
6   6 Putative signal recognition particle 160
7   7 QUAKING isoform 5-like 179
8   8 Tetratricopeptide repeat (TPR)-containing protein-like 193
9 MQTL1.2 1 ABC transporter subunit-like 1
10   2 F-box domain-containing protein-like 39
11   3 Glutaredoxin-like 43
12   4 Leucine zipper protein-like 51
13   5 Lustrin A-like 52
14   6 Nodulin-like protein 57
15   7 Ovate family protein-like 59
16   8 Pentatricopeptide repeat (PPR)-containing protein-like 60
17   9 Protein kinase-like 66
18   10 Putative auxin-independent growth promoter 76
19 MQTL1.3 1 Cell wall protein-like 21
20   2 Cytochrome P450 monooxygenase 30
21   3 F-box domain-containing protein-like 39
22   4 hAT dimerisation domain-containing protein-like 45
23   5 HGWP repeat-containing protein-like 48
24   6 Leucine zipper protein-like 51
25   7 Nucleoporin-like protein 58
26   8 Pentatricopeptide repeat (PPR)-containing protein-like 60
27   9 pr1-like protein 65
28   10 Sucrose-phosphatase-like protein 192
29   11 Zinc knuckle domain-containing protein-like 206
30 MQTL1.4 1 Polyprotein-like 64
31   2 Putative aspartic proteinase nepenthesin II 74
32   3 Putative cytokinin oxidase 97
33   4 Putative lectin-like receptor kinase 1:1 130
34   5 Putative vacuole membrane protein 1 172
35 MQTL2.1 1 Ethylene-responsive family protein-like 37
36   2 Putative cytochrome P450 94
37   3 Putative DREPP2 protein 106
38   4 Putative F-box protein 111
39   5 Putative flavin-containing monooxygenase 114
40   6 Putative GTP-binding protein 120
41   7 Putative kaurene synthase 128
42   8 Putative pentatricopeptide repeat (PPR)-containing protein 140
43   9 Putative sugar transporter 164
44   10 Aquaporin 7
45 MQTL2.2 1 Cell wall protein 21
46   2 Dehydration-responsive family protein-like 33
47   3 F-box protein-like 39
48   4 Growth-regulating factor 1-like 44
49   5 HGWP repeat-containing protein-like 48
50   6 Pentatricopeptide repeat (PPR)-containing protein-like 60
51   7 Putative anther-specific protein 70
52   8 Putative anthocyanin biosynthetic gene regulator 72
53   9 Putative basic-helix-loop-helix transcription factor 77
54   10 Putative cell division control protein 85
55   11 Putative cold acclimation protein 90
56   12 Putative CRT/DRE binding factor 1 93
57   13 Putative cytochrome P450 94
58   14 Putative growth-regulating factor 1 119
59   15 Putative high-mobility group protein 124
60   16 Putative pectin methylesterase 138
61   17 Putative photoperiod-independent early flowering 145
62   18 Putative sexual differentiation process protein 158
63   19 Root-specific protein 184
64   20 Sexual differentiation process protein-like 187
65   21 Trehalose-6-phosphate phosphatase 194
66   22 UDP-glycosyltransferase-like 194
67   23 Vesicle-associated membrane protein-like 199
68   24 Zinc finger (C3HC4-type RING finger)-like 201
69 MQTL3.1 1 Adapitin protein-like 4
70   2 Cell division control protein 2-like 18
71   3 Cyclin 2 interactor-like 26
72   4 F-box domain-containing protein-like 39
73   5 Flavanone 3-hydroxylase-like 40
74   6 HGWP repeat-containing protein-like 48
75   7 MADS-box transcription factor 53
76   8 NAC domain-containing protein-like 54
77   9 Photomorphogenic 63
78   10 Putative callose synthase 1 81
79   11 Putative cell cycle switch protein 84
80   12 Putative cell division control protein 2 86
81   13 Putative cytochrome p450 94
82   14 Putative dihydrodipicolinate reductase 103
83   15 Putative dihydrofolate synthetase 104
84 MQTL3.2 1 ABC transporter-like protein-like 2
85   2 c-type cytochrome synthesis 1 25
86   3 Pentatricopeptide repeat (PPR)-containing protein-like 60
87   4 Pherophorin-dz1 protein-like 62
88   5 Putative cleavage stimulation factor subunit 1-like protein 89
89   6 Putative cold acclimation protein 90
90   7 Putative peroxidase 142
91   8 Putative phytochrome C 146
92   9 Putative prolamin 148
93   10 Putative prolyl 4-hydroxylase 149
94   11 Putative protein kinase SPK-2 150
95   12 Putative protein phosphatase 2C 151
96   13 Putative UDP-glucose 6-dehydrogenase 171
97   14 Putative zinc-finger protein 177
98   15 Receptor protein kinase 181
99   16 Senescence downregulated leo1 185
100 MQTL4.1 1 Auxin-related protein-like 11
101   2 Cell division cycle 20
102   3 Cytochrome c oxidase 28
103   4 Hydroxyproline-rich glycoprotein 49
104   5 Integral membrane transporter-like 50
105   6 Lustrin A-like 52
106   7 Protoporphyrinogen IX oxidase 67
107   8 Putative calcium-binding protein 79
108   9 Putative cell cycle checkpoint protein MAD2 homolog 83
109   10 Putative chitinase 88
110   11 Putative CONSTANS-like protein 92
111   12 Putative ER33 protein 108
112   13 Putative LRR receptor-like kinase 131
113   14 Putative salt-tolerance protein 154
114   15 Stress-inducible protein 191
115   16 Zinc finger (C3HC4-type RING finger)-like protein 202
116 MQTL4.2 1 ABC-1-like 3
117   2 Auxin response factor 9
118   3 Calcium-dependent protein kinase 15
119   4 CCAAT-box binding factor HAP5 17
120   5 Cytochrome P450 monooxygenase 29
121   6 Cytokinin-induced apoptosis inhibitor 1 32
122   7 Heat shock protein binding 47
123   8 HGWP repeat-containing protein 48
124   9 Pentatricopeptide repeat (PPR)-containing protein 60
125   10 Pherophorin-C1 protein precursor-like 61
126   11 Putative calcium-dependent protein kinase 80
127   12 Putative dehydration-responsive element-binding protein 101
128   13 Putative ethylene response factor 109
129   14 Putative floricaula 115
130   15 Putative flowering locus D 116
131   16 Putative growth-regulating factor 118
132   17 Putative IAA24 125
133   18 Putative inositol 1,3,4,5,6-pentakisphosphate 2-kinase 126
134   19 Putative jasmonate O-methyltransferase 127
135   20 Putative late embryogenesis abundant protein 129
136   21 Putative wall-associated kinase 1 175
137   22 RCP1 (ROOT CAP 1)-like 180
138   23 Stress-related-like protein interactor-like 190
139   24 Wall-associated protein kinase-like 200
140   25 Zinc finger (C3HC4-type RING finger)-like 201
141 MQTL8.1 1 Heat shock protein 46
142   2 Vesicle-associated membrane protein 197
143   3 Auxin efflux carrier protein-like 8
144   4 Cell division control protein-like 19
145   5 Cellulose synthase-1-like protein 22
146   6 CLAVATA1 receptor kinase (CLV1)-like protein 23
147   7 CONSTANS-like protein 24
148   8 Cytochrome b5-like 27
149   9 Ethylene-responsive elongation factor EF-Ts precursor-like 36
150   10 F-box domain-containing protein-like 39
151   11 Germin protein type 1 42
152   12 HGWP repeat-containing protein-like 49
153   13 NAC2 protein-like 55
154   14 Nam-like protein 56
155   15 Nodulin-like protein 57
156   16 Pentatricopeptide repeat (PPR)-containing protein-like 60
157   17 Polyprotein-like protein 64
158   18 Putative ABC transporter 68
159   19 Putative anthocyanin 5-aromatic acyltransferase 71
160   20 Putative AP2/EREBP transcription factor LEAFY PETIOLE 73
161   21 Putative CCAAT box binding factor/transcription factor Hap2a 82
162   22 Putative chaperone GrpE 87
163   23 Putative cold shock protein-1 91
164   24 Putative cytokinin-regulated kinase 1 98
165   25 Putative death receptor interacting protein 99
166   26 Putative DEFECTIVE IN ANTHER DEHISCENCE1 100
167   27 Putative farnesylated protein 110
168   28 Putative fertility restorer homolog 113
169   29 Putative MADS-box protein 132
170   30 Putative male fertility protein 133
171   31 Putative nucleoporin 137
172   32 Putative pherophorin 143
173   33 Putative senescence-associated protein 155
174   34 Putative osmatic embryogenesis receptor-like kinase 1 178
175   35 Putative sexual differentiation process protein isp4 159
176   36 Putative starch synthase 161
177   37 Putative stress-responsive gene 162
178   38 Putative teosinte branched1 protein 166
179   39 Putative trehalose-6-phosphate synthase 170
180   40 Putative vesicle-associated membrane associated protein 173
181   41 Putative wall-associated kinase 174
182   42 Ripening-related protein-like 182
183   43 Root cap protein 1-like 183
184   44 Senescence-associated protein-like 186
185   45 Stress-inducible protein-like 189
186   46 Zinc finger-like protein 204
187 MQTL8.2 1 AP2 domain transcription factor-like 6
188   2 Auxin-induced protein-related-like protein 10
189   3 F-box protein family-like protein 39
190   4 Pentatricopeptide repeat (PPR)-containing protein-like 60
191   5 Putative calcineurin B subunit 78
192   6 Putative cytochrome P450 monooxygenase 95
193   7 Putative male fertility protein 133
194   8 Putative NAC domain protein 134
195   9 Putative senescence-associated protein 155
196   10 Putative stromal cell-derived factor 2 precursor 163
197   11 Putative temperature stress-induced lipocalin 165
198   12 Putative teosinte branched1 protein 166
199   13 Putative tethering factor 167
200   14 Putative trehalose-6-phosphate synthase 170
201   15 Somatic embryogenesis receptor kinase-like protein 188
202   16 Zinc finger protein-like 204
203 MQTL10.1 1 Aminotransferase-like 5
204   2 Putative gibberellin-regulated protein 117
205   3 Putative peptide transporter 1 141
206   4 Putative serine threonine kinase 157
207   5 Putative wall-associated kinase 4 176
208   6 ABC transporter-like 1
209 MQTL10.2 1 Calcineurin B-like protein 13
210   2 Calcium-dependent protein kinase, isoform 1 (CDPK 1) 16
211   3 Cytochrome p450-like 31
212   4 Dehydration-responsive family protein-like 33
213   5 Elicitor-like protein 34
214   6 Ethylene-responsive protein-like 38
215   7 F-box protein-like 39
216   8 Fringe-related protein-like 41
217   9 Pentatricopeptide repeat (PPR)-containing protein-like 60
218   10 Putative anther-specific protein 70
219   11 Putative auxin response factor 10 75
220   12 Putative cytokinin dehydrogenase 96
221   13 Putative DEFECTIVE IN ANTHER DEHISCENCE1 100
222   14 Putative dehydration-induced protein 102
223   15 Putative DRE binding factor 2 105
224   16 Putative drought-inducible protein 107
225   17 Putative fertility restorer 112
226   18 Putative hairy meristem 121
227   19 Putative heat shock factor RHSF5 122
228   20 Putative hexose carrier protein HEX6 123
229   21 Putative NAM (no apical meristem) gene 136
230   22 Putative pollen-specific kinase partner protein 147
231   23 Putative root cap-specific glycine-rich protein 152
232   24 Putative salt-induced MAP kinase 1 153
233   25 Putative senescence-associated protein DH 156
234   26 Putative tonoplast membrane integral protein 168
235   27 Putative trehalose-6-phosphate phosphatase 169
236   28 Putative zinc finger protein 177
237   29 Ripening-related protein-like 182
238   30 Senescence-associated protein-like 186
239   31 Stress-inducible protein-like 189
240   32 Tetratricopeptide repeat (TPR)-containing protein-like 193
241   33 Universal stress protein-like 195
242 . 34 Vacuolar protein-sorting 13C protein-like 196
243   35 Vesicle-associated membrane associated protein-like 198
244   36 Zinc finger (HIT type)-like 203
245 MQTL12.1 1 Calcineurin B-like 12
246   2 Cell wall protein-like 21
247   3 HGWP repeat-containing protein-like 48
248   4 Hydroxyproline-rich glycoprotein-like 49
249   5 Putative pherophorin-dz1 protein 144
250   6 Zinc knuckle-containing protein-like 205