Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG start site

BMC Genomics

Table 1 Characteristics of genome segments and predicted functions of proteins in SMReV.

	Gene					Protein				Predicted function
Genome segment	Segment length (bp)	GC%	5'UTR (bp)	3'UTR (bp)	Nucleotide position of ORF	Coding potential	Protein size (aa)	MM (KDa)	Isoelectric point (pI)
S1	3947	54.32	13	40	14-3907	VP1	1297	141.4	6.13	Core protein, capping enzyme
S2	3866	54.86	12	29	13-3837	VP2	1274	140.97	8.39	Core protein, polymerase
S3	3687	55.19	18	39	19-3648	VP3	1209	131.10	6.10	Core protein, Helicase, NTPase
S4	2640	57.54	24	162	25-2478	NS88	817	87.80	6.18	Nonstructural protein, involved in the formation of viral inclusion bodies with NS38
S5	2241	53.59	21	27	22-2214	VP4	730	80.52	7.23	NTPase
S6	2057	54.93	28	67	29-1990	VP5	653	69.25	4.69	Outer capsid
S7	1399	54.82	16	74	17-613	NS22	198	22.15	8.93	FAST protein
					489-1325	NS32	278	31.81	6.16	Nonstructural protein
S8	1317	55.50	12	51	13-1266	VP6	417	45.18	8.91	Core protein
S9	1118	56.26	25	40	26-1078	NS38	350	38.12	6.60	Nonstructural protein, involved in formation of viral inclusion bodies with NS88
S10	986	56.80	27	62	28-924	VP7	298	32.18	7.56	Outer capsid
S11	784	56.63	24	52	25-732	NS25	235	25.32	7.88	Nonstructural protein

ISSN: 1471-2164