Table 1 Details of repeat clusters present in RsaI sequences identified by repeat finder http://zlab.bu.edu/repfind/form.html
S. No. | Sequence ID | Repeat cluster | Location |
|---|---|---|---|
1. | pDp1 | CGTGAAC | 1026,1033 |
ATGTGAA | 485, 666, 721, 734 | ||
GTG | 23, 41, 69, 161, 190, 198, 487, 668, 723, 736, 746, 780, 786, 800, 817, 832, 838, 879, 988, 1027, 1034, 1200 | ||
GTGA | 163, 198, 487, 668, 723, 736, 786, 800, 817, 832, 988, 1027, 1034 | ||
GTGAA | 487, 668, 723, 736, 817, 832, 1027, 1034 | ||
TGTGAA | 486, 667, 722, 735, 831, | ||
CGTGAA | 816, 1026, 1033, | ||
GGATTTT | 140,147 | ||
2. | pDp2 | AAACTATGG | 209, 375,592 |
AAACTAT | 209, 375, 468, 592 | ||
ATACATTTGT | 498, 538 | ||
3. | pDp3 | AACATT | 469, 481, 488 |
TAT | 15, 123, 139, 446, 451, 454, 464, 474, 583 |