Skip to main content

Table 1 Details of repeat clusters present in RsaI sequences identified by repeat finder http://zlab.bu.edu/repfind/form.html

From: RsaI repetitive DNA in Buffalo Bubalus bubalis representing retrotransposons, conserved in bovids, are part of the functional genes

S. No. Sequence ID Repeat cluster Location
1. pDp1 CGTGAAC 1026,1033
   ATGTGAA 485, 666, 721, 734
   GTG 23, 41, 69, 161, 190, 198, 487, 668, 723, 736, 746, 780, 786, 800, 817, 832, 838, 879, 988, 1027, 1034, 1200
   GTGA 163, 198, 487, 668, 723, 736, 786, 800, 817, 832, 988, 1027, 1034
   GTGAA 487, 668, 723, 736, 817, 832, 1027, 1034
   TGTGAA 486, 667, 722, 735, 831,
   CGTGAA 816, 1026, 1033,
   GGATTTT 140,147
2. pDp2 AAACTATGG 209, 375,592
   AAACTAT 209, 375, 468, 592
   ATACATTTGT 498, 538
3. pDp3 AACATT 469, 481, 488
   TAT 15, 123, 139, 446, 451, 454, 464, 474, 583