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Figure 3 | BMC Genomics

Figure 3

From: Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies

Figure 3

Molecular Phylogenetic analysis by Maximum Likelihood method: The evolutionary history was inferred by using the Maximum Likelihood method based on the Tamura-Nei model [35]. The tree with the highest log likelihood (-282250.6332) is shown. Initial tree(s) for the heuristic search were obtained automatically as follows. When the number of common sites was < 100 or less than one fourth of the total number of sites, the maximum parsimony method was used; otherwise BIONJ method with MCL distance matrix was used. The tree is drawn to scale, with branch lengths measured in the number of substitutions per site. There were a total of 10208 positions in the final dataset.

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