Table 2 List of new predicted MIR genes in the sorghum genome
From: Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems
MIR gene ID | Position | Strand | miRNA size | miRNA sequence 5'-3' | miRNA* sequence 5'-3' | miRNA* size |
|---|---|---|---|---|---|---|
sbi-MIR5381 | Ch1: 574388..574497 | + | 19 | AAGATCTGTGGCGCCGAGC | TCGGCGCTAAGATCTCTGG | 19 |
sbi-MIR5382 | Ch2: 1930828..1930937 | + | 18 | CCAATCTAAACAGGCCCT | GACCTGTTTAGATTGGGA | 18 |
sbi-MIR5383 | Ch4: 43242765..43242874 | + | 24 | ATGACAGAGCTCCGGCAGAGATAT | TTCTCCGCCGAGCTTATCTGTGG | 23 |
sbi-MIR5384 | Ch4: 45785396..45785505 | + | 18 | CGCGCCGCCGTCCAGCGG | CTTGGCCGGTGCACGCGTC | 19 |
sbi-MIR5385 | Ch6: 56307517..56307626 | + | 22 | ACCACCAACCCCACCGCTTCTC | GAAGCGGTGGTGTTGGTGGTGA | 22 |
sbi-MIR5386 | Ch7: 877244..877353 | + | 20 | CGTCGCTGTCGCGCGCGCTG | GGTCAGGGCAGAGCACGCA | 19 |
sbi-MIR5387 | Ch7: 15969322..15969431 | + | 25 | TAACACGAACCGGTGCTAAAGGATC | CCCTTTAGCACCGGTTCGTGTTACA | 25 |
sbi-MIR5388 | Ch8: 1629110..1629219 | + | 22 | ATCTTTGCCGGGTGTCTCTGAC | CAGCAAACATTCGGCAAAGAAAA | 23 |
sbi-MIR5389 | Ch8: 4848342..4848451 | + | 21 | GCTTGAGTTTATCAGCCGAGT | ATGGCTTATCAGCCAAGTGA | 20 |