Table 1 Number of identified peptides and proteins by algorithms with a FDR < 2%
Algorithm | Threshold | Number of Identified Peptides | MS/MS FDR (%) | Number of Identified RefSeq Proteins | Number of Identified Splice Variants |
|---|---|---|---|---|---|
Mascot | E-value < 0.001 | 2731 | 1.88 | 747 | 21 |
OMSSA | E-value < 0.09 | 2407 | 1.89 | 745 | 20 |
X! Tandem | E-value < 0.04 | 2682 | 1.76 | 831 | 36 |
InsPecT | p-value < 0.02 | 2563 | 1.91 | 738 | 33 |