Table 3 Differentially expressed genes within GWS QTL regions
Gene | Full name | SSC positions (Sscrofa9) | QTL | Breed** | DE tissue |
|---|---|---|---|---|---|
C6orf211 | chromosome 6 open reading frame 211 | 1: 15,909,144-15,924,522 | 1a | D | Testis |
GPD1L | glycerol-3-phosphate dehydrogenase 1-like | 1: 44,341,710-44,342,765 | 1c | L | Testis |
GAS2 | growth arrest-specific 2 | hsa11: 22,647,188-22,834,601* | 2a | L | Testis |
DCI | dodecenoyl-CoA isomerase | hsa16: 2,289,396-2,301,615* | 3a | D | Testis |
GLIS2 | GLIS family zinc finger 2 | hsa16: 4,364,762-4,389,598* | 3a | D | Liver, testis |
TIGD7 | tigger transposable element derived 7 | 3: 34,867,636-34,868,997 | 3a | L | Testis |
RAB11FIP3 | RAB11 family interacting protein 3 (class II) | 3: 35,607,368-35,662,467 | 3a | D | Testis |
NARFL | nuclear prelamin A recognition factor-like | 3: 35,702,474-35,708,696 | 3a | D | Liver |
GNPTG | N-acetylglucosamine-1-phosphate transferase, gamma subunit | 3: 36,242,649-36,244,181 | 3a | L | Testis |
IL1A | interleukin 1, alpha | 3: 39,059,355-39,072,049 | 3a | D | Testis |
IL1R1 | interleukin 1 receptor, type I | 3: 47,896,450-47,909,993 | 3a | D | Liver |
CALB1 | calbindin 1, 28kDa | 4: 47,870,808-47,893,791 | 4 | D | Testis |
SCUBE3 | signal peptide, CUB domain, EGF-like 3 | 7: 35,596,571-35,617,151 | 7a | L | Testis |
C6orf89 | chromosome 6 open reading frame 89 | 7: 37,180,914-37,212,104 | 7a | D | Testis |
PTPN9 | protein tyrosine phosphatase, non-receptor type 9 | 7: 63,302,924-63,419,418 | 7b | D | Testis |
CYP11A1 | cytochrome P450, family 11, subfamily A, polypeptide 1 | hsa15: 74,630,100-74,660,081* | 7b | D, L | Testis |
EXOSC8 | exosome component 8 | 11: 12,214,101-12,412,285 | 11a | D | Testis |
KCNMB2 | potassium large conductance calcium-activated channel, subfam M, b memb 2 | 13: 89,166,152-89,194,414 | 13b | L | Liver |
MLF1IP | MLF1 interacting protein | 15: 42,999,826-43,027,571 | 15 | D | Testis |
SORBS2 | sorbin and SH3 domain containing 2 | 15: 43,835,332-44,063,424 | 15 | L | Liver |
TM2D2 | TM2 domain containing 2 | 15: 44,964,565-44,971,596 | 15 | L | Liver |
RBPMS | RNA binding protein with multiple splicing | 15: 51,472,724-51,785,193 | 15 | D | Testis |
FMNL2 | formin-like 2 | 15: 56,320,296-56,433,061 | 15 | L | Testis |
ARL6IP6 | ADP-ribosylation-like factor 6 interacting protein 6 | 15: 56,490,709-56,522,096 | 15 | L | Liver, testis |
CD302 | CD302 molecule | 15: 62,141,546-62,172,624 | 15 | D | Testis |
GCG | glucagon | 15: 64,064,865-64,074,555 | 15 | L | Testis |
RND3 | Rho family GTPase 3 | hsa2: 151,324,709-151,395,525* | 15 | L | Liver |
STAR | steroidogenic acute regulatory protein | hsa8: 38,000,226-38,008,783* | 15 | L | Testis |
TNFAIP6 | tumor necrosis factor, alpha-induced protein 6 | hsa2: 152,214,106-152,236,560* | 15 | L | Testis |
ZRANB3 | zinc finger, RAN-binding domain containing 3 | hsa2: 135,894,486-136,288,806* | 15 | D | Testis |