Skip to main content

Table 1 Distribution and density analysis of TCDD-induced AhR enriched regionsa in the mouse genome.

From: Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver

     

Genic Regionc

  

Genome

Intergenic DNAb

Intragenic DNAb

10kb upstream

5' UTR

CDS

3' UTR

2 hr

AhR enrichment

14,446

4,163

10,283

4,601

2,569

7,499

225

 

Enrichment densityd

5.44

2.62

9.64

18.65

17.29

7.21

7.29

24 hr

AhR enrichment

974

344

630

306

132

507

9

 

Enrichment densityd

0.37

0.22

0.59

1.24

0.89

0.49

0.29

  1. a AhR enriched regions with a FDR < 0.01
  2. b intergenic, intragenic and gene regions are defined as previously described in Additional File 1
  3. c regions are defined using the genomic locations in the refGene database from the UCSC Genome Browser
  4. d density calculated per million base pairs