Skip to main content

Table 3 ACEχ2 of three genomes calculated for different sets of genes.

From: Quantification of codon selection for comparative bacterial genomics

 

Pseudomonas aeruginosa

Escherichia coli

Buchnera aphidicola

All Genes

3.70 (5566)a

10.3 (4144)

1.97 (564)

Genus Core Genes

6.55 (1675)b

11.8 (2593)d

n/a

Enteric Core Genes

n/ac

28.7 (499)

1.94 (499)

Translation40 genes

72.6 (40)

63.6 (40)

4.63 (40)

  1. a. ACE z values were calculated using the Translation40 gene set to construct f o and all ORFs to construct f n . Number of genes is reported in parentheses.
  2. b. Putative orthologs of Pseudomonas aeruginosa, P. mendocina, P. stutzeri, P. entomophila, and P. putida.
  3. c. Not applicable.
  4. d. Putative orthologs of E. coli, E. fergusonii, and E. albertii