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Table 2 Array capture validation of SR called deletions. 1, 2

From: Identification of genomic indels and structural variations using split reads

t n 3 2 3 4 5 6 7
True positive 30 20 15 13 9 7
Positive 115 33 22 18 12 10
Positive predictive value 4 0.26 0.60 0.68 0.72 0.75 0.70
  1. Notes:
  2. 1. 0.5× 454 reads for a CEU individual (NA12878) from the 1000 Genomes Project are used to make the SR deletion calls.
  3. 2. Only deletions longer than 500 bp are selected for array capture validation.
  4. 3. tn, is threshold on the number of supportive reads.
  5. 4. Positive predictive value = True positive/Positive.
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