t
n
3
|
2
|
3
|
4
|
5
|
6
|
7
|
---|
True positive
|
30
|
20
|
15
|
13
|
9
|
7
|
Positive
|
115
|
33
|
22
|
18
|
12
|
10
|
Positive predictive value 4
|
0.26
|
0.60
|
0.68
|
0.72
|
0.75
|
0.70
|
- Notes:
- 1. 0.5× 454 reads for a CEU individual (NA12878) from the 1000 Genomes Project are used to make the SR deletion calls.
- 2. Only deletions longer than 500 bp are selected for array capture validation.
- 3. tn, is threshold on the number of supportive reads.
- 4. Positive predictive value = True positive/Positive.