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Table 2 Expression differences among all eight libraries for the ten most frequently represented GO Slim terms

From: Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

GO Slim term Expression percentage
  SlM SlF SlFf SdM SdF SmM SvH Ds
Response to stress 2.3% 8.1% 2.3% 1.5% 2.8% 6.6% 8.2% 4.2%
Cellular component organization 2.6% 2.9% 2.0% 1.2% 2.0% 3.7% 3.5% 7.5%
Translation 1.3% 7.3% 1.8% 1.0% 4.7% 2.2% 3.4% 2.5%
Photosynthesis 2.2% 6.2% 2.3% 0.8% 2.7% 4.6% 3.8% 0.4%
Kinase activity 2.8% 2.7% 2.5% 0.8% 1.1% 3.2% 3.2% 4.6%
Cell communication 2.3% 2.2% 2.7% 1.2% 1.7% 2.1% 1.9% 2.2%
Signal transduction 2.2% 2.2% 2.6% 1.1% 1.6% 2.1% 1.9% 2.1%
Response to abiotic stimulus 1.0% 3.5% 1.2% 0.5% 1.2% 2.5% 3.1% 2.2%
Transcription 1.2% 1.8% 1.1% 0.8% 1.8% 1.3% 1.4% 1.4%
Response to biotic stimulus 0.4% 2.1% 0.4% 0.3% 0.5% 1.2% 1.4% 0.2%
  1. (Biological processes and Molecular functions). For each library, the expression percentage is calculated as the number of reads included in contigs matching a term divided by the total number of reads included in all contigs. Terms are sorted by the total expression common to all libraries in descending order.