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Table 2 Expression differences among all eight libraries for the ten most frequently represented GO Slim terms

From: Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

GO Slim term

Expression percentage

 

SlM

SlF

SlFf

SdM

SdF

SmM

SvH

Ds

Response to stress

2.3%

8.1%

2.3%

1.5%

2.8%

6.6%

8.2%

4.2%

Cellular component organization

2.6%

2.9%

2.0%

1.2%

2.0%

3.7%

3.5%

7.5%

Translation

1.3%

7.3%

1.8%

1.0%

4.7%

2.2%

3.4%

2.5%

Photosynthesis

2.2%

6.2%

2.3%

0.8%

2.7%

4.6%

3.8%

0.4%

Kinase activity

2.8%

2.7%

2.5%

0.8%

1.1%

3.2%

3.2%

4.6%

Cell communication

2.3%

2.2%

2.7%

1.2%

1.7%

2.1%

1.9%

2.2%

Signal transduction

2.2%

2.2%

2.6%

1.1%

1.6%

2.1%

1.9%

2.1%

Response to abiotic stimulus

1.0%

3.5%

1.2%

0.5%

1.2%

2.5%

3.1%

2.2%

Transcription

1.2%

1.8%

1.1%

0.8%

1.8%

1.3%

1.4%

1.4%

Response to biotic stimulus

0.4%

2.1%

0.4%

0.3%

0.5%

1.2%

1.4%

0.2%

  1. (Biological processes and Molecular functions). For each library, the expression percentage is calculated as the number of reads included in contigs matching a term divided by the total number of reads included in all contigs. Terms are sorted by the total expression common to all libraries in descending order.