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Table 3 Prot4EST ORF prediction results

From: Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

Library

Predicted ORFs

 

Similarity

ESTScan

Longest ORF

Average

length

Total

supSL

39%

31%

31%

208

129251

supSD

29%

36%

35%

193

129154

SmM

36%

28%

35%

205

50798

SvH

60%

24%

16%

245

32131

Ds

59%

23%

18%

259

29668

  1. ORF prediction based on similarity with BLAST results, ESTScan prediction and longest reading frame.
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BMC Genomics

ISSN: 1471-2164

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