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Table 6 Library SNP content

From: Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

Library SlM SlF SlFf SdM SdF SmM SvH Ds
Contigs* 2909 5486 2287 2993 2912 4982 5028 6094
Contigs with SNPs 1221 1517 976 1333 1078 1709 1619 2513
SNPs 6648 6308 5576 6307 4653 7361 7381 12282
Substitutions 4847 5165 3873 5356 3516 5681 6402 9927
% Transitions/transversions 52/48 61/39 47/53 63/37 56/44 57/43 60/40 61/39
% heterozygous positions 0.39 0.19 0.43 0.38 0.28 0.26 0.27 0.32
  1. * Only contigs assembled from at least 4 reads were considered. The total length of these contigs was used to calculate the percentage of heterozygous positions. All SNPs that are not due to substitutions are indels.