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Table 1 QTLs localized to the T.cacao (cv. Matina 1-6) FPC contig 23 (LG5) sub-genome region

From: Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

Trait Name Mapping population Max LOD Map Position (cM)* Most significant locus/peak (cM) Phenotypic R2 Left flanking locus Right flanking locus
Black pod 12 QTL (consensus) (SCA6xH)xIFC1 3.9 8.75 to 13.5 11.1 49.6 mTcCIr265 gTcCIR139a
Bean shape index S52xCatongo 5.3 0 to 17 6 17.1 gTcCIR148 cTcCIR73
Pod weight S52xCatongo 4.8 0 to 17 6 13.8 gTcCIR148 AFLP_SxC39-1
  1. *Map position from composite map (Brown et al. [29] or Lanaud et al. [24]).
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