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Table 4 MTP BAC Alignments to initial 35L-20PP Assembly

From: Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

Scaffold ID BAC MTP Order Scaffolds Hit 1BES Ends Mapped
scf7180000011013 TCC_BC094K12 0 1 2
scf7180000011013 TCC_BA051I09 1 1 2
scf7180000011013 TCC_BB064E14 2 1 2
scf7180000011013 TCC_BB054D24 3 1 2
scf7180000011013 TCC_BC055G13 4 1 2
scf7180000011013 TCC_BA043P11 5 1 2
scf7180000011013 TCC_BC073F18 6 1 2
scf7180000011013 TCC_BC061N12 7 1 2
scf7180000011009 TCC_BB070N13 8 1 2
n.a. TCC_BB056D12 9 0 0
scf7180000011011 TCC_BC090O14 10 1 2
scf7180000011011 TCC_BB046L13 11 1 1
scf7180000011011 TCC_BC064B23 12 1 2
scf7180000011011 TCC_BB049P20 13 1 2
scf7180000011011 TCC_BC032C24 14 1 2
scf7180000011011 TCC_BA003D04 15 1 2
scf7180000011011 TCC_BB027J18 16 1 2
scf7180000011011 TCC_BC028B14 17 1 2
scf7180000011010 TCC_BB056D20 18 1 2
scf7180000011012 TCC_BC076K20 19 1 2
scf7180000011012 TCC_BC089D21 20 1 2
scf7180000011011 TCC_BC090G10 21 1 2
scf7180000011012 TCC_BC011L18 22 1 2
scf7180000011012 TCC_BA095N18 23 1 2
scf7180000011012 TCC_BA077B05 24 1 2
scf7180000011012 TCC_BB074J24 25 1 2
scf7180000011012 TCC_BA096J15 26 1 2
  1. 194.4% BES Mapped; 2Bold = Sanger Sequenced BAC