Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes

Table 4 MTP BAC Alignments to initial 35L-20PP Assembly

Scaffold ID	BAC	MTP Order	Scaffolds Hit	¹BES Ends Mapped
scf7180000011013	TCC_BC094K12	0	1	2
scf7180000011013	TCC_BA051I09	1	1	2
scf7180000011013	TCC_BB064E14	2	1	2
scf7180000011013	TCC_BB054D24	3	1	2
scf7180000011013	TCC_BC055G13	4	1	2
scf7180000011013	TCC_BA043P11	5	1	2
scf7180000011013	TCC_BC073F18	6	1	2
scf7180000011013	TCC_BC061N12	7	1	2
scf7180000011009	TCC_BB070N13	8	1	2
n.a.	TCC_BB056D12	9	0	0
scf7180000011011	TCC_BC090O14	10	1	2
scf7180000011011	TCC_BB046L13	11	1	1
scf7180000011011	TCC_BC064B23	12	1	2
scf7180000011011	TCC_BB049P20	13	1	2
scf7180000011011	TCC_BC032C24	14	1	2
scf7180000011011	TCC_BA003D04	15	1	2
scf7180000011011	TCC_BB027J18	16	1	2
scf7180000011011	TCC_BC028B14	17	1	2
scf7180000011010	TCC_BB056D20	18	1	2
scf7180000011012	TCC_BC076K20	19	1	2
scf7180000011012	TCC_BC089D21	20	1	2
scf7180000011011	TCC_BC090G10	21	1	2
scf7180000011012	TCC_BC011L18	22	1	2
scf7180000011012	TCC_BA095N18	23	1	2
scf7180000011012	TCC_BA077B05	24	1	2
scf7180000011012	TCC_BB074J24	25	1	2
scf7180000011012	TCC_BA096J15	26	1	2

ISSN: 1471-2164