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Table 1 Results of BLASTN of anthocyanin reference sequences against EST consensus sequences in this study

From: De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

Gene family*

Reference sequence source

GenBank ID

Contigs with hits to reference

 

Daucus carota

AB435640.1

Contig21709

Phenylalanine ammoniam-lyase (PAL)

Daucus carota

AB089813.1

Contig3962

 

Daucus carota

D85850.1

Contig937

 

Petroselinum crispum

X81159.1

Contig28113

 

Petroselinum crispum

X81158.1

Contig21482

cinammate 4-hydroxylase (CA4H)

Ammi majus

AY219918.1

Contig524

4-coumaroyl-coenzyme A ligase (4CL)

Petroselinum crispum

X05350.1

Contig52163

 

Petroselinum crispum

X05351.1

Contig8294

Chalcone synthase (CHS)

Daucus carota

Q9ZS40

Contig16173

 

Daucus carota

Q9ZS41

Contig45955

 

Daucus carota

Q9SB26

Contig16173

Chalcone--flavonone isomerase (CHI)

Callistephus chinensis

Q42663

-

flavanone 3-hydroxylase (F3H)

Daucus carota

AF184270.1

Contig52090

Flavonoid 3'-monooxygenase (F3'H)

Petunia x hybrida

Q9SBQ9

-

flavonol synthase (FLS)

Petroselinum crispum

AY230249.1

-

Flavonoid 3',5'-hydroxylase (F3'5'H)

Campanula medium

O04773

-

Dihydroflavonol 4-reductase (DFR)

Daucus carota

AF184272.1

Contig47011

 

Daucus carota

AF184271.1

Contig3218

leucoanthocyanidin dioxygenase 2 (LDOX)

Daucus carota

AF184274.1

Contig22451

 

Daucus carota

AF184273.1

Contig22451

Anthocyanidin 3-O-glucosyltransferase (UFGT)

Gentiana triflora

Q96493

-

  1. * based on information from Hummer and Schreirer and Boss et al. [4, 23]