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Table 3 Differentially expressed UniGene transcripts in three different comparisons

From: Global gene expression of Poncirus trifoliata, Citrus sunki and their hybrids under infection of Phytophthora parasitica

ID CITEST GENE_INFO accession number Categories (MIPS) Rub × Sun Pool R × Sunk Pool R × Pool S
Upregulated    Fold P_Value Fold P_Value Fold P_Value
CAS-PT-300852 Disease resistance protein RPS4 BAB11393.1 cell rescue, defense and virulence 4,0 0,01 5,0 0,00 3,0 0,00
CAS-CS-103511 TIR-NBS-LRR resistance protein XP_002325496.1 cell rescue, defense and virulence 4,0 0,02 4,2 0,02 4,0 0,01
CAS-PT-303903 Lea5 protein Q39644.1 cell rescue, defense and virulence 30,9 0,00 22,0 0,00 4,1 0,01
CAS-PT-301521 FNR2 (ferredoxin-NADP(+) NP_001077566.1 cell type localisation 13,5 0,02 13,2 0,03 3,3 0,02
CAS-CS-115011 Leucoanthocyanidin dioxygenase XP_002528475.1 metabolism 5,3 0,03 6,4 0,04 3,2 0,01
CAS-CS-103575 Miraculin-like protein 2 ACL78790.1 protein activity regulation 43,1 0,01 25,1 0,02 10,1 0,01
CAS-CR-209520 AL07-2p ACJ03067.1 protein fate (folding, mod., destination) 87,5 0,00 106,4 0,02 3,7 0,00
CAS-CS-119563 Serine-threonine protein kinase XP_002514954.1 protein fate (folding, mod., destination) 86,1 0,01 162,3 0,02 7,9 0,00
CAS-CS-122102 Serine-threonine protein kinase XP_002512394.1 protein fate (folding, mod., destination) 25,5 0,01 50,8 0,04 4,6 0,02
CAS-CS-128948 Transducin family protein ABS32230.1 protein with binding function 6,8 0,04 4,0 0,02 3,1 0,05
CAS-CS-118778 Synaptobrevin-related family XP_002304221.1 subcellular localisation 5,6 0,02 5,6 0,04 4,4 0,05
CAS-PT-303418 Putative DNA binding protein ABO93454.1 subcellular localisation 10,7 0,00 9,9 0,02 3,1 0,03
CAS-PT-305376 Gag-pol polyprotein AAR13298.1 transposable elements 17,2 0,04 3,7 0,02 3,3 0,02
CAS-PT-309741 Hypothetical protein XP_002609958.1 unclassified proteins 18,7 0,01 12,0 0,05 3,3 0,01
CAS-PT-309581 Hypothetical protein XP_001018346.1 unclassified proteins 24,9 0,00 27,1 0,03 7,0 0,01
CAS-CS-114114 Hypothetical protein XP_002280912.1 unclassified proteins 19,6 0,02 29,4 0,04 3,1 0,01
CAS-PT-310125 Hypothetical protein XP_002275595.1 unclassified proteins 13,1 0,01 28,4 0,01 5,4 0,01
CAS-CS-105219 Hypothetical protein XP_002590734.1 unclassified proteins 6,6 0,03 6,2 0,02 3,1 0,02
CAS-PT-305253 No significant similarity found   unclassified proteins 25,5 0,01 6,2 0,05 3,2 0,01
CAS-CS-127334 No significant similarity found   unclassified proteins 10,2 0,00 6,2 0,04 3,6 0,00
CAS-PT-301031 No significant similarity found   unclassified proteins 70,6 0,01 37,6 0,01 3,4 0,01
Downregulated         
CAS-CS-101776 superoxide dismutase CAA03881.1 function or cofactor requirement 4,0 0,02 4,2 0,02 4,0 0,01
CAS-CS-114557 predicted protein XP_002324594.1 unclassified proteins 30,9 0,00 22,0 0,00 4,1 0,01
CAS-CR-203746 predicted protein XP_002331132.1 unclassified proteins 13,5 0,02 13,2 0,03 3,3 0,02
  1. P. trifoliata Rubidoux versus C. sunki; resistant hybrids (Pool R) versus C. sunki; and resistant hybrids (Pool R) versus susceptible hybrids (Pool S), 48 hours after P. Parasitica inoculation.
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