Table 6 Best quality miRNA targets identified in reverse-complement sequences of melon unigenes
From: Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing
miRNA annotation | Unigene | Score (miRanda) | Score (TargetFinder) | Annotation |
|---|---|---|---|---|
miR167|d | cCI_22-D03-M13R_c | 327 | -- | metalloendopeptidase |
miR390|a, b | cCL2179Contig1 | 317 | -- | ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding |
miR167|d | cPSI_41-B02-M13R_c | 200 | -- | non-annotated unigene |
miR157|a, b, c | cCI_04-H02-M13R_c | 195 | 0 | non-annotated unigene |
miR166|a, b, c, d, e, f, g | cA_31-D02-M13R_c | 195 | 0 | non-annotated unigene |
miR166|a, b, c, d, e, f, g | cCI_54-H07-M13R_c | 195 | 0 | non-annotated unigene |
miR166|a, b, c, d, e, f, g | cCI_69-H04-M13R_c | 195 | 1 | non-annotated unigene |
miR167|a, b | cPSI_41-B02-M13R_c | 195 | 1 | non-annotated unigene |
miR168|a, b | cCI_38-C07-M13R_c | 195 | 0 | non-annotated unigene |
miR170|a | cPSI_40-F10-M13R_c | 191 | 0.5 | non-annotated unigene |
miR397|a | c46d_36-B03-M13R_c | 191 | 1.5 | LAC10 (laccase 10); laccase |
miR157|d | cCI_04-H02-M13R_c | 190 | 0 | non-annotated unigene |
miR171|b, c | cPSI_40-F10-M13R_c | 190 | 1 | non-annotated unigene |
miR319|a, b | c15d_24-H05-M13R_c | 190 | 0 | non-annotated unigene |
miR165|a, b | cA_31-D02-M13R_c | 187 | 1 | non-annotated unigene |
miR165|a, b | cCI_54-H07-M13R_c | 187 | 1 | non-annotated unigene |
miR165|a, b | cCI_69-H04-M13R_c | 187 | 2 | non-annotated unigene |
miR171|a | cPSI_40-F10-M13R_c | 187 | 2 | non-annotated unigene |
miR159|a | cCL1409Contig2 | 183 | 3 | brassinosteroid signaling positive regulator-related |
miR159|b | cCL1409Contig2 | 183 | 4 | brassinosteroid signaling positive regulator-related |
miR159|c | cCL1409Contig2 | 183 | 4 | brassinosteroid signaling positive regulator-related |
miR169|a | c15d_10-G06-M13R_c | 183 | 4 | non-annotated unigene |
miR169|b, c | c15d_10-G06-M13R_c | 183 | 4 | non-annotated unigene |
miR169|h, i, j, k, l, m, n | c15d_10-G06-M13R_c | 183 | 3 | non-annotated unigene |
miR156|a, b, c, d, e, f | cCL1781Contig1 | 181 | 3 | DNA-directed RNA polymerase II, putative (RPB10) |
miR167|d_melon | cPSI_41-B02-M13R_c | -- | 0 | non-annotated unigene |
miR159|c | c15d_24-H05-M13R_c | -- | 2 | non-annotated unigene |
miR159|b | c15d_24-H05-M13R_c | -- | 2.5 | non-annotated unigene |