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Table 6 Best quality miRNA targets identified in reverse-complement sequences of melon unigenes

From: Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing

miRNA annotation Unigene Score (miRanda) Score (TargetFinder) Annotation
miR167|d cCI_22-D03-M13R_c 327 -- metalloendopeptidase
miR390|a, b cCL2179Contig1 317 -- ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding
miR167|d cPSI_41-B02-M13R_c 200 -- non-annotated unigene
miR157|a, b, c cCI_04-H02-M13R_c 195 0 non-annotated unigene
miR166|a, b, c, d, e, f, g cA_31-D02-M13R_c 195 0 non-annotated unigene
miR166|a, b, c, d, e, f, g cCI_54-H07-M13R_c 195 0 non-annotated unigene
miR166|a, b, c, d, e, f, g cCI_69-H04-M13R_c 195 1 non-annotated unigene
miR167|a, b cPSI_41-B02-M13R_c 195 1 non-annotated unigene
miR168|a, b cCI_38-C07-M13R_c 195 0 non-annotated unigene
miR170|a cPSI_40-F10-M13R_c 191 0.5 non-annotated unigene
miR397|a c46d_36-B03-M13R_c 191 1.5 LAC10 (laccase 10); laccase
miR157|d cCI_04-H02-M13R_c 190 0 non-annotated unigene
miR171|b, c cPSI_40-F10-M13R_c 190 1 non-annotated unigene
miR319|a, b c15d_24-H05-M13R_c 190 0 non-annotated unigene
miR165|a, b cA_31-D02-M13R_c 187 1 non-annotated unigene
miR165|a, b cCI_54-H07-M13R_c 187 1 non-annotated unigene
miR165|a, b cCI_69-H04-M13R_c 187 2 non-annotated unigene
miR171|a cPSI_40-F10-M13R_c 187 2 non-annotated unigene
miR159|a cCL1409Contig2 183 3 brassinosteroid signaling positive regulator-related
miR159|b cCL1409Contig2 183 4 brassinosteroid signaling positive regulator-related
miR159|c cCL1409Contig2 183 4 brassinosteroid signaling positive regulator-related
miR169|a c15d_10-G06-M13R_c 183 4 non-annotated unigene
miR169|b, c c15d_10-G06-M13R_c 183 4 non-annotated unigene
miR169|h, i, j, k, l, m, n c15d_10-G06-M13R_c 183 3 non-annotated unigene
miR156|a, b, c, d, e, f cCL1781Contig1 181 3 DNA-directed RNA polymerase II, putative (RPB10)
miR167|d_melon cPSI_41-B02-M13R_c -- 0 non-annotated unigene
miR159|c c15d_24-H05-M13R_c -- 2 non-annotated unigene
miR159|b c15d_24-H05-M13R_c -- 2.5 non-annotated unigene