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Table 1 Genome sequences included in Figure 1

From: BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Ring number1 Genome Accession Reference
Ring 5 Enterohaemorrhagic E. coli O157:H7 str. EDL933 AE005174 [25]
Ring 6 Enterohaemorrhagic E. coli O157:H7 str. EC4115 CP001164 J. Craig Venter Institute
Ring 7 Non-pathogenic E. coli str. K12 substr. MG1655 U00096 [26]
  Non-pathogenic E. coli str. K12 substr. W3110 AP009048 [27]
  Non-pathogenic E. coli HS CP000802 [28]
Ring 8 Non-pathogenic E. coli IAI1 CU928160 [29]
Ring 9 Non-pathogenic E. coli B str. REL606 CP000819 [30]
Ring 10 Environmental E. coli SMS-3-5 CP000970 [31]
Ring 11 Uropathogenic E. coli CFT073 AE014075 [32]
Ring 12 Uropathogenic E. coli UTI89 CP000243 [33]
Ring 13 Extraintestinal E. coli IAI39 CU928164 [29]
Ring 14 Extraintestinal E. coli UMN026 CU928163 [29]
Ring 15 Extraintestinal E. coli S88 CU928161 [29]
Ring 16 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 CP001120 J. Craig Venter Institute
  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 CP001144 J. Craig Venter Institute
  Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 AM933173 [34]
  Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 CP000886 W.U. Genome Sequencing Center
  Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 AM933172 [34]
  Salmonella enterica subsp. enterica serovar cholerasuis str. SC-B67 AE017220 [35]
  Salmonella enterica subsp. enterica serovar Newport str. SL254 CP001113 J. Craig Venter Institute
  Salmonella enterica subsp. enterica serovar Typhi str. CT18 AL513382 [36]
  Salmonella enterica subsp. enterica serovar Typhi str. Ty2 FN424405 [37]
  Salmonella enterica subsp. enterica serovar Agona str. SL483 CP001138 J. Craig Venter Institute
  Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 CP000026 [38]
  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 AE006468 [39]
  Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 CP000857 [40]
  1. 1 Genomes are listed as they appear on Figure 1, from innermost to outermost. Rings 1 to 4 correspond to GC-skew, GC-content, coverage and contig boundaries, respectively.
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BMC Genomics

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