Table 2 Codon usage comparison between L. cuprina and D. melanogaster based on 200 conserved genes
| Â | Â | L. cuprina | D. melanogaster | ||
|---|---|---|---|---|---|
Amino acid | Codon | Fraction | Number | Fraction | Number |
Ala (A) | GCA | 0.094 | 350 | 0.088 | 337 |
Ala (A) | GCC | 0.398 | 1480 | 0.602 | 2308 |
Ala (A) | GCG | 0.021 | 77 | 0.114 | 436 |
Ala (A) | GCT | 0.487 | 1812 | 0.196 | 751 |
Cys (C) | TGC | 0.514 | 390 | 0.831 | 582 |
Cys (C) | TGT | 0.486 | 369 | 0.169 | 118 |
Asp (D) | GAC | 0.264 | 681 | 0.533 | 1371 |
Asp (D) | GAT | 0.736 | 1897 | 0.467 | 1200 |
Glu (E) | GAA | 0.791 | 2582 | 0.202 | 652 |
Glu (E) | GAG | 0.209 | 684 | 0.798 | 2581 |
Phe (F) | TTC | 0.62 | 1090 | 0.814 | 1429 |
Phe (F) | TTT | 0.38 | 667 | 0.186 | 327 |
Gly (G) | GGA | 0.121 | 407 | 0.223 | 742 |
Gly (G) | GGC | 0.253 | 850 | 0.496 | 1652 |
Gly (G) | GGG | 0.015 | 49 | 0.031 | 102 |
Gly (G) | GGT | 0.611 | 2050 | 0.251 | 837 |
His (H) | CAC | 0.485 | 458 | 0.689 | 648 |
His (H) | CAT | 0.515 | 486 | 0.311 | 293 |
Ile (I) | ATA | 0.123 | 335 | 0.073 | 192 |
Ile (I) | ATC | 0.333 | 903 | 0.644 | 1692 |
Ile (I) | ATT | 0.544 | 1475 | 0.283 | 742 |
Lys (K) | AAA | 0.518 | 2101 | 0.147 | 572 |
Lys (K) | AAG | 0.482 | 1958 | 0.853 | 3316 |
Leu (L) | CTA | 0.049 | 194 | 0.043 | 170 |
Leu (L) | CTC | 0.075 | 297 | 0.165 | 661 |
Leu (L) | CTG | 0.038 | 149 | 0.552 | 2208 |
Leu (L) | CTT | 0.113 | 445 | 0.07 | 281 |
Leu (L) | TTA | 0.167 | 657 | 0.02 | 79 |
Leu (L) | TTG | 0.558 | 2195 | 0.15 | 600 |
Met (M) | ATG | 1 | 1208 | 1 | 1092 |
Asn (N) | AAC | 0.431 | 993 | 0.738 | 1538 |
Asn (N) | AAT | 0.569 | 1311 | 0.262 | 546 |
Pro (P) | CCA | 0.277 | 563 | 0.185 | 375 |
Pro (P) | CCC | 0.451 | 916 | 0.499 | 1013 |
Pro (P) | CCG | 0.031 | 64 | 0.226 | 460 |
Pro (P) | CCT | 0.241 | 490 | 0.09 | 183 |
Gln (Q) | CAA | 0.801 | 1529 | 0.178 | 346 |
Gln (Q) | CAG | 0.199 | 381 | 0.822 | 1595 |
Arg (R) | AGA | 0.145 | 386 | 0.044 | 120 |
Arg (R) | AGG | 0.028 | 74 | 0.074 | 200 |
Arg (R) | CGA | 0.033 | 89 | 0.064 | 172 |
Arg (R) | CGC | 0.223 | 595 | 0.48 | 1297 |
Arg (R) | CGG | 0.009 | 24 | 0.08 | 217 |
Arg (R) | CGT | 0.562 | 1498 | 0.258 | 696 |
Ser (S) | AGC | 0.117 | 312 | 0.219 | 593 |
Ser (S) | AGT | 0.141 | 376 | 0.062 | 168 |
Ser (S) | TCA | 0.152 | 405 | 0.05 | 135 |
Ser (S) | TCC | 0.253 | 675 | 0.343 | 929 |
Ser (S) | TCG | 0.089 | 238 | 0.234 | 635 |
Ser (S) | TCT | 0.247 | 659 | 0.093 | 251 |
Thr (T) | ACA | 0.201 | 493 | 0.107 | 259 |
Thr (T) | ACC | 0.431 | 1055 | 0.587 | 1421 |
Thr (T) | ACG | 0.03 | 74 | 0.175 | 424 |
Thr (T) | ACT | 0.337 | 825 | 0.131 | 316 |
Val (V) | GTA | 0.218 | 733 | 0.052 | 174 |
Val (V) | GTC | 0.24 | 806 | 0.31 | 1046 |
Val (V) | GTG | 0.126 | 424 | 0.491 | 1657 |
Val (V) | GTT | 0.416 | 1400 | 0.147 | 495 |
Trp (W) | TGG | 1 | 430 | 1 | 438 |
Tyr (Y) | TAC | 0.455 | 666 | 0.771 | 1099 |
Tyr (Y) | TAT | 0.545 | 799 | 0.229 | 326 |
STOP | TAA | 0.785 | 157 | 0.6 | 120 |
STOP | TAG | 0.125 | 25 | 0.31 | 62 |
STOP | TGA | 0.09 | 18 | 0.09 | 18 |
Total | Â | Â | 47579 | Â | 47095 |