|
Chr
|
MY
|
FY
|
PY
|
FPC
|
PPC
|
PL
|
SCS
|
DPR
|
SCE
|
DCE
|
SSB
|
DSB
|
NM
|
All traits
|
|---|
|
1
|
2
|
4
|
4
|
4
|
5
|
15
|
4
|
17
|
7
|
6
|
7
|
3
|
15
|
93
|
|
2
|
3
|
0
|
0
|
0
|
1
|
1
|
11
|
2
|
0
|
0
|
0
|
2
|
0
|
20
|
|
3
|
10
|
4
|
1
|
4
|
1
|
9
|
7
|
17
|
4
|
0
|
4
|
6
|
1
|
68
|
|
4
|
3
|
2
|
2
|
0
|
0
|
4
|
0
|
0
|
2
|
0
|
3
|
0
|
0
|
16
|
|
5
|
2
|
2
|
2
|
7
|
13
|
0
|
4
|
0
|
7
|
3
|
10
|
0
|
2
|
52
|
|
6
|
2
|
2
|
5
|
1
|
6
|
2
|
9
|
0
|
0
|
6
|
0
|
1
|
5
|
39
|
|
7
|
0
|
6
|
1
|
1
|
2
|
11
|
13
|
15
|
4
|
11
|
0
|
6
|
4
|
74
|
|
8
|
2
|
1
|
0
|
0
|
0
|
4
|
1
|
3
|
0
|
0
|
0
|
3
|
1
|
15
|
|
9
|
7
|
6
|
1
|
1
|
2
|
0
|
0
|
0
|
4
|
3
|
1
|
6
|
4
|
35
|
|
10
|
5
|
0
|
0
|
0
|
3
|
0
|
2
|
6
|
1
|
0
|
4
|
0
|
0
|
21
|
|
11
|
3
|
3
|
3
|
1
|
3
|
0
|
1
|
0
|
1
|
0
|
0
|
5
|
0
|
20
|
|
12
|
2
|
1
|
1
|
2
|
3
|
0
|
6
|
0
|
8
|
2
|
6
|
1
|
1
|
33
|
|
13
|
13
|
12
|
8
|
4
|
1
|
0
|
1
|
2
|
1
|
0
|
0
|
7
|
4
|
53
|
|
14
|
2
|
1
|
1
|
24
|
2
|
0
|
0
|
2
|
0
|
0
|
6
|
4
|
0
|
42
|
|
15
|
1
|
2
|
1
|
2
|
0
|
1
|
0
|
0
|
1
|
1
|
4
|
5
|
1
|
19
|
|
16
|
1
|
0
|
0
|
0
|
0
|
2
|
11
|
1
|
0
|
0
|
3
|
3
|
0
|
21
|
|
17
|
4
|
7
|
6
|
11
|
14
|
9
|
1
|
5
|
20
|
21
|
7
|
2
|
14
|
121
|
|
18
|
8
|
4
|
6
|
5
|
4
|
8
|
2
|
5
|
9
|
12
|
6
|
4
|
10
|
83
|
|
19
|
2
|
3
|
2
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
0
|
3
|
0
|
10
|
|
20
|
0
|
2
|
11
|
0
|
2
|
0
|
2
|
0
|
1
|
1
|
1
|
5
|
0
|
25
|
|
21
|
4
|
1
|
5
|
0
|
5
|
0
|
0
|
0
|
2
|
1
|
6
|
5
|
1
|
30
|
|
22
|
1
|
0
|
0
|
0
|
0
|
3
|
2
|
3
|
0
|
1
|
0
|
2
|
1
|
13
|
|
23
|
5
|
5
|
9
|
2
|
3
|
0
|
1
|
0
|
2
|
1
|
1
|
16
|
3
|
48
|
|
24
|
2
|
1
|
2
|
2
|
2
|
1
|
1
|
0
|
1
|
1
|
3
|
0
|
2
|
18
|
|
25
|
0
|
2
|
0
|
3
|
0
|
0
|
5
|
1
|
0
|
0
|
1
|
0
|
0
|
12
|
|
26
|
0
|
7
|
6
|
6
|
10
|
9
|
3
|
4
|
6
|
10
|
9
|
1
|
11
|
82
|
|
27
|
5
|
6
|
7
|
0
|
1
|
1
|
1
|
0
|
3
|
1
|
0
|
1
|
3
|
29
|
|
28
|
0
|
0
|
5
|
0
|
1
|
2
|
0
|
3
|
3
|
1
|
1
|
1
|
3
|
20
|
|
29
|
0
|
0
|
0
|
0
|
0
|
1
|
2
|
1
|
0
|
2
|
1
|
3
|
1
|
11
|
|
X
|
11
|
16
|
11
|
19
|
16
|
15
|
9
|
12
|
12
|
16
|
15
|
3
|
12
|
167
|
|
U
|
0
|
0
|
0
|
1
|
0
|
2
|
1
|
1
|
1
|
0
|
1
|
2
|
1
|
10
|
|
P*
|
10-12
|
10-24
|
10-23
|
10-17
|
10-22
|
10-29
|
10-23
|
10-25
|
10-38
|
10-23
|
10-24
|
10-21
|
10-34
| |
|
R2
|
0.42
|
0.43
|
0.42
|
0.45
|
0.40
|
0.54
|
0.54
|
0.53
|
0.52
|
0.42
|
0.56
|
0.55
|
0.49
| |
- SNP, single nucleotide polymorphism; Chr, chromosome; MY, milk yield; FY, fat yield; PY, protein yield; FPC, fat percentage; PPC, protein percentage; PL, productive life; SCS, somatic cell score; DPR, daughter pregnancy rate; SCE, service-sire calving ease; DCE, daughter calving ease; SSB, service-sire stillbirth; DSB, daughter stillbirth; NM, net merit; U, unknown. Boldface indicates ≥10 significant SNP effects. *Rounded cutoff for P value for top 100 most significant SNPs for trait. R2, variation accounted for by the top 100 SNPs for the trait.
