Table 1 Distribution of the top 100 most significant SNP effects for predicted transmitting abilities for 13 production, health, and reproduction traits of contemporary U.S. Holsteins by chromosome.

1

2

4

4

4

5

15

4

17

7

6

7

3

15

93

2

3

0

0

0

1

1

11

2

0

0

0

2

0

20

3

10

4

1

4

1

9

7

17

4

0

4

6

1

68

4

3

2

2

0

0

4

0

0

2

0

3

0

0

16

5

2

2

2

7

13

0

4

0

7

3

10

0

2

52

6

2

2

5

1

6

2

9

0

0

6

0

1

5

39

7

0

6

1

1

2

11

13

15

4

11

0

6

4

74

8

2

1

0

0

0

4

1

3

0

0

0

3

1

15

9

7

6

1

1

2

0

0

0

4

3

1

6

4

35

10

5

0

0

0

3

0

2

6

1

0

4

0

0

21

11

3

3

3

1

3

0

1

0

1

0

0

5

0

20

12

2

1

1

2

3

0

6

0

8

2

6

1

1

33

13

13

12

8

4

1

0

1

2

1

0

0

7

4

53

14

2

1

1

24

2

0

0

2

0

0

6

4

0

42

15

1

2

1

2

0

1

0

0

1

1

4

5

1

19

16

1

0

0

0

0

2

11

1

0

0

3

3

0

21

17

4

7

6

11

14

9

1

5

20

21

7

2

14

121

18

8

4

6

5

4

8

2

5

9

12

6

4

10

83

19

2

3

2

0

0

0

0

0

0

0

0

3

0

10

20

0

2

11

0

2

0

2

0

1

1

1

5

0

25

21

4

1

5

0

5

0

0

0

2

1

6

5

1

30

22

1

0

0

0

0

3

2

3

0

1

0

2

1

13

23

5

5

9

2

3

0

1

0

2

1

1

16

3

48

24

2

1

2

2

2

1

1

0

1

1

3

0

2

18

25

0

2

0

3

0

0

5

1

0

0

1

0

0

12

26

0

7

6

6

10

9

3

4

6

10

9

1

11

82

27

5

6

7

0

1

1

1

0

3

1

0

1

3

29

28

0

0

5

0

1

2

0

3

3

1

1

1

3

20

29

0

0

0

0

0

1

2

1

0

2

1

3

1

11

X

11

16

11

19

16

15

9

12

12

16

15

3

12

167

U

0

0

0

1

0

2

1

1

1

0

1

2

1

10

P*

10^-12

10^-24

10^-23

10^-17

10^-22

10^-29

10^-23

10^-25

10^-38

10^-23

10^-24

10^-21

10^-34

R²

0.42

0.43

0.42

0.45

0.40

0.54

0.54

0.53

0.52

0.42

0.56

0.55

0.49