Table 2 Distribution of the top 100 most significant SNP effects for predicted transmitting abilities for 18 conformation traits of contemporary U.S. Holsteins by chromosome.
Chr | STA | STR | BD | RW | DF | RA | FUA | RUH | UD | UC | FTP | RTP | TL | FA | RLS | RLR | FL | FS | All traits |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 3 | 3 | 3 | 1 | 5 | 2 | 3 | 5 | 5 | 4 | 2 | 7 | 8 | 3 | 12 | 1 | 2 | 3 | 72 |
2 | 1 | 1 | 1 | 1 | 4 | 5 | 3 | 11 | 1 | 5 | 6 | 10 | 2 | 0 | 6 | 7 | 5 | 3 | 72 |
3 | 1 | 4 | 0 | 1 | 10 | 2 | 1 | 1 | 3 | 3 | 1 | 2 | 2 | 0 | 7 | 0 | 0 | 0 | 38 |
4 | 3 | 3 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 0 | 8 | 1 | 7 | 1 | 0 | 4 | 2 | 2 | 36 |
5 | 8 | 6 | 14 | 5 | 0 | 12 | 7 | 4 | 7 | 0 | 4 | 1 | 6 | 7 | 4 | 3 | 11 | 9 | 108 |
6 | 0 | 6 | 3 | 10 | 0 | 7 | 9 | 5 | 2 | 8 | 14 | 5 | 4 | 5 | 2 | 3 | 5 | 8 | 96 |
7 | 2 | 2 | 0 | 0 | 11 | 0 | 5 | 5 | 5 | 13 | 7 | 7 | 2 | 0 | 3 | 0 | 0 | 5 | 67 |
8 | 1 | 1 | 1 | 1 | 6 | 16 | 0 | 0 | 0 | 4 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 36 |
9 | 1 | 0 | 1 | 0 | 0 | 14 | 2 | 0 | 1 | 1 | 7 | 5 | 0 | 3 | 0 | 0 | 0 | 0 | 35 |
10 | 7 | 1 | 10 | 14 | 19 | 4 | 12 | 21 | 4 | 3 | 2 | 4 | 0 | 0 | 1 | 0 | 0 | 16 | 118 |
11 | 30 | 13 | 23 | 2 | 6 | 2 | 4 | 15 | 2 | 5 | 0 | 4 | 13 | 4 | 1 | 32 | 11 | 16 | 183 |
12 | 3 | 0 | 0 | 0 | 1 | 3 | 0 | 0 | 3 | 3 | 1 | 3 | 5 | 0 | 4 | 0 | 1 | 3 | 30 |
13 | 3 | 13 | 9 | 5 | 2 | 1 | 4 | 1 | 3 | 1 | 4 | 3 | 1 | 8 | 1 | 4 | 9 | 1 | 73 |
14 | 0 | 0 | 1 | 0 | 5 | 0 | 0 | 1 | 0 | 3 | 1 | 0 | 0 | 1 | 2 | 1 | 2 | 0 | 17 |
15 | 1 | 2 | 1 | 2 | 0 | 2 | 1 | 0 | 3 | 6 | 0 | 5 | 0 | 2 | 0 | 0 | 1 | 0 | 26 |
16 | 1 | 3 | 4 | 8 | 5 | 2 | 7 | 2 | 4 | 1 | 8 | 7 | 3 | 2 | 10 | 2 | 1 | 3 | 73 |
17 | 1 | 1 | 0 | 0 | 3 | 0 | 2 | 0 | 6 | 1 | 2 | 1 | 15 | 15 | 6 | 1 | 5 | 0 | 59 |
18 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 1 | 1 | 0 | 2 | 3 | 7 | 8 | 1 | 2 | 0 | 28 |
19 | 3 | 2 | 2 | 10 | 1 | 1 | 7 | 3 | 4 | 8 | 4 | 5 | 0 | 0 | 0 | 1 | 0 | 5 | 56 |
20 | 7 | 5 | 4 | 1 | 0 | 0 | 7 | 3 | 7 | 1 | 4 | 3 | 0 | 10 | 1 | 9 | 3 | 2 | 67 |
21 | 1 | 0 | 0 | 2 | 0 | 0 | 2 | 1 | 9 | 4 | 5 | 1 | 9 | 2 | 3 | 1 | 2 | 1 | 43 |
22 | 1 | 2 | 2 | 2 | 2 | 5 | 2 | 1 | 3 | 1 | 3 | 1 | 2 | 1 | 4 | 2 | 4 | 3 | 41 |
23 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 4 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 23 |
24 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 1 | 1 | 2 | 3 | 1 | 4 | 0 | 0 | 0 | 16 |
25 | 0 | 2 | 2 | 0 | 2 | 0 | 1 | 0 | 3 | 1 | 1 | 1 | 0 | 2 | 0 | 1 | 1 | 1 | 18 |
26 | 3 | 7 | 2 | 4 | 2 | 2 | 8 | 4 | 11 | 1 | 1 | 1 | 4 | 13 | 5 | 9 | 16 | 5 | 98 |
27 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 2 | 10 | 0 | 6 | 0 | 0 | 3 | 0 | 1 | 0 | 24 |
28 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 4 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 11 |
29 | 0 | 0 | 0 | 1 | 0 | 4 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 2 | 1 | 0 | 1 | 0 | 12 |
X | 14 | 22 | 15 | 27 | 12 | 9 | 8 | 10 | 6 | 7 | 2 | 9 | 10 | 10 | 7 | 18 | 12 | 10 | 208 |
U | 2 | 0 | 1 | 1 | 0 | 2 | 0 | 2 | 0 | 1 | 2 | 0 | 0 | 0 | 3 | 0 | 1 | 1 | 16 |
P* | 10-21 | 10-20 | 10-18 | 10-18 | 10-20 | 10-11 | 10-18 | 10-16 | 10-19 | 10-18 | 10-12 | 10-12 | 10-13 | 10-20 | 10-15 | 10-17 | 10-17 | 10-19 | Â |
R2 | 0.56 | 0.49 | 0.48 | 0.53 | 0.45 | 0.40 | 0.56 | 0.50 | 0.55 | 0.52 | 0.48 | 0.46 | 0.39 | 0.52 | 0.38 | 0.47 | 0.49 | 0.56 | Â |