Table 4 Synteny coverage between T. cacao (Matina 1-6) physical map and reference genome assemblies
From: A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6
Reference Genome | Coverage Genome | Coverage | Double-coverage* |
|---|---|---|---|
V. vinifera | T. cacao | 87% | 56% |
V. vinifera | V. vinifera | 73% | 27% |
P. trichoptera | T. cacao | 91% | 78% |
P. trichoptera | P. trichoptera | 78% | 24% |
A. thaliana | T. cacao | 71% | 35% |
A. thaliana | A. thaliana | 44% | 13% |
T. cacao (Criollo) | T. cacao (Matina 1-6) | 97% | 72% |
T. cacao (Criollo) | T. cacao (Criollo) | 65% | 25% |